Gene
| Gene Model ID | pfu_aug1.0_7170.1_17062 |
|---|---|
| Locus | scaffold7170.1 : 3446 ... 7650 : + |
| To GenomeBrowser | scaffold7170.1:3446..7650 |
| Genes list of scaffold | scaffold7170.1 |
| Synonym | pfu_aug2.0_1177.1_24748 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7170.1_17062.t1 | 2 | 1 | Vinculin | 5 | 177 | 0.0 | 265.0 | 0.0 | 0.0 | 220.8 |
| pfu_aug1.0_7170.1_17062.t1 | 2 | 2 | Vinculin | 178 | 217 | 0.0 | 265.0 | 4.2e-17 | 1.6e-13 | 49.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7170.1_17062.t1 | gi|1098900|gb|AAA82613.1| | alpha catenin [Lytechinus variegatus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7170.1_17062.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7170.1_17062.t1 atggacagggctgagatagagacagattctgaagttgaggatcagtatgagactggtagtaaatcgagttaccatactgg tgccgatgaagattttggtaagagtgatcgagccatgatgagacagctgccggcagaggaaagggagaaaatccagatgc aggtctcagagttcctgcaggataaggccaaacttgacagagaagtagccaagtgggacgatagcggtaatgacatcatc gttatggccaaacagatgtgtatgatcatgatggagatgacagactttacaaggggtcgcggaccattaaaaagtactat ggatgttatcaacgcagctaagaaaatctccgaggctggtaccaagctggatcgcatagcaaaagaaatagcagatcagt gtcccgactctgcttccaaaaaagatttgctggcctacttacaaagaattgctttgtattgtcatcaactgaacatcaca agcaaggtcaaggctgacgtacagagtgttagcggagaactgatcgtatcggggtgtgctgattctgccagcaagaaaga tttattggcatatttacaaaggattgccctatactgtcagcagctaaatataaccagcaaagtgaaagctgacatttcaa atgtgtcccaaggggttgtaatcgtgtcaggggtaagagagtactaa |
|
Protein
| Protein ID | pfu_aug1.0_7170.1_17062.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7170.1_17062.t1 MDRAEIETDSEVEDQYETGSKSSYHTGADEDFGKSDRAMMRQLPAEEREKIQMQVSEFLQDKAKLDREVAKWDDSGNDII VMAKQMCMIMMEMTDFTRGRGPLKSTMDVINAAKKISEAGTKLDRIAKEIADQCPDSASKKDLLAYLQRIALYCHQLNIT SKVKADVQSVSGELIVSGCADSASKKDLLAYLQRIALYCQQLNITSKVKADISNVSQGVVIVSGVREY |
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