Gene
Gene Model ID | pfu_aug1.0_7187.1_09507 |
---|---|
Locus | scaffold7187.1 : 8306 ... 30438 : + |
To GenomeBrowser | scaffold7187.1:8306..30438 |
Genes list of scaffold | scaffold7187.1 |
Synonym | pfu_aug2.0_5774.1_16139 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | EF1 |
Description | blast search |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | elongation factor 1 alpha-like |
Description | emb|X55324.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU | 6 | 170 | 0.0 | 164.0 | 0.0 | 0.0 | 163.8 |
pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU_D2 | 192 | 258 | 1.4e-17 | 63.5 | 2.0e-20 | 5.0e-17 | 61.7 |
pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU_D3 | 266 | 373 | 6.8e-37 | 125.6 | 7.9e-40 | 2.0e-36 | 124.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7187.1_09507.t1 | gi|297259373|ref|XP_001085675.2| | PREDICTED: elongation factor 1-alpha 2-like isoform 4 [Macaca mulatta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
8-16cell | 1 |
>Adult tissues | |
adductorMuscle | 1 |
mantleEdge | 2 |
mantlePallium | 2 |
Transcript
Transcript ID | pfu_aug1.0_7187.1_09507.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7187.1_09507.t1 atgccaaaagaaaaaattcatatcaacatcgttgtgattggccatgtcgactctggtaaatccaccagcaccggtcacct gatttacaagtgtggaggtattgacaagagaaccatcgaaaaatttgaaaaggaggctcaagagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcaccattgatattgccctgtggaagttt gaaacaaccaaatactatgtaaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtacatc tcaagctgactgtgctgtgttgattattgctgctggtgttggggaattcgaggctggaatatctaagaacggacagactc gcgaacatgccctattagcatatactcttggtgttaaacagatgattgttggtgtcaacaaaatggacagcactgatcca ccttattctgagttggcaaagccaactattcatgcattggaatcgattcccccagtacgaaccgtacaacgcagaaaaat cttacatagtattggaactgtacctgtcgggcgtgttgagacaggtatactgaaaccaggaacggttgttaccttcgccc ctgttaatgttaccactgaagttaagtctgttgagatgcaccatgaggccttaaccgaggctctacctggagataatgtt ggcttcaacgtgaaaaatgtgtcggtgaaagatatcaagagaggaaatgttgctggagacagcaaaaatgatcccccgaa aggagctaaattgtttaatgcacaggtcattgtcctgaaccatcccggacagatacacaacggctacgcgcctgtccttg actgtcatactgcccacatcgcatgtaaattcgcggaaatcaaagaaaaggtggaccgtcgtagcggtaaaaaacttgaa gacaaccccaaatttgtcaaatctggtgatgctgctatggttgacatgattcctcagaaaccaatgtgtgtagaagcctt tgcagagtacgccccacttgggcgttttgctgtccgtgacatgagacagaccgtggctgtgggagtcattaaaagcgttg agaaacaagaggccactggtggtaaggtaaccaaagcagcccagaaagctcagaacaagaagtga |
Protein
Protein ID | pfu_aug1.0_7187.1_09507.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7187.1_09507.t1 MPKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIIAAGVGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTDP PYSELAKPTIHALESIPPVRTVQRRKILHSIGTVPVGRVETGILKPGTVVTFAPVNVTTEVKSVEMHHEALTEALPGDNV GFNVKNVSVKDIKRGNVAGDSKNDPPKGAKLFNAQVIVLNHPGQIHNGYAPVLDCHTAHIACKFAEIKEKVDRRSGKKLE DNPKFVKSGDAAMVDMIPQKPMCVEAFAEYAPLGRFAVRDMRQTVAVGVIKSVEKQEATGGKVTKAAQKAQNKK |