Gene
| Gene Model ID | pfu_aug1.0_7187.1_09507 |
|---|---|
| Locus | scaffold7187.1 : 8306 ... 30438 : + |
| To GenomeBrowser | scaffold7187.1:8306..30438 |
| Genes list of scaffold | scaffold7187.1 |
| Synonym | pfu_aug2.0_5774.1_16139 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | EF1 |
| Description | blast search |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | elongation factor 1 alpha-like |
| Description | emb|X55324.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU | 6 | 170 | 0.0 | 164.0 | 0.0 | 0.0 | 163.8 |
| pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU_D2 | 192 | 258 | 1.4e-17 | 63.5 | 2.0e-20 | 5.0e-17 | 61.7 |
| pfu_aug1.0_7187.1_09507.t1 | 1 | 1 | GTP_EFTU_D3 | 266 | 373 | 6.8e-37 | 125.6 | 7.9e-40 | 2.0e-36 | 124.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7187.1_09507.t1 | gi|297259373|ref|XP_001085675.2| | PREDICTED: elongation factor 1-alpha 2-like isoform 4 [Macaca mulatta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantleEdge | 2 |
| mantlePallium | 2 |
Transcript
| Transcript ID | pfu_aug1.0_7187.1_09507.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7187.1_09507.t1 atgccaaaagaaaaaattcatatcaacatcgttgtgattggccatgtcgactctggtaaatccaccagcaccggtcacct gatttacaagtgtggaggtattgacaagagaaccatcgaaaaatttgaaaaggaggctcaagagatgggaaaaggttcct tcaaatatgcctgggtattggacaaactgaaggcagagcgtgaacgtggtatcaccattgatattgccctgtggaagttt gaaacaaccaaatactatgtaaccatcattgatgcccctggccacagagatttcatcaagaacatgatcacaggtacatc tcaagctgactgtgctgtgttgattattgctgctggtgttggggaattcgaggctggaatatctaagaacggacagactc gcgaacatgccctattagcatatactcttggtgttaaacagatgattgttggtgtcaacaaaatggacagcactgatcca ccttattctgagttggcaaagccaactattcatgcattggaatcgattcccccagtacgaaccgtacaacgcagaaaaat cttacatagtattggaactgtacctgtcgggcgtgttgagacaggtatactgaaaccaggaacggttgttaccttcgccc ctgttaatgttaccactgaagttaagtctgttgagatgcaccatgaggccttaaccgaggctctacctggagataatgtt ggcttcaacgtgaaaaatgtgtcggtgaaagatatcaagagaggaaatgttgctggagacagcaaaaatgatcccccgaa aggagctaaattgtttaatgcacaggtcattgtcctgaaccatcccggacagatacacaacggctacgcgcctgtccttg actgtcatactgcccacatcgcatgtaaattcgcggaaatcaaagaaaaggtggaccgtcgtagcggtaaaaaacttgaa gacaaccccaaatttgtcaaatctggtgatgctgctatggttgacatgattcctcagaaaccaatgtgtgtagaagcctt tgcagagtacgccccacttgggcgttttgctgtccgtgacatgagacagaccgtggctgtgggagtcattaaaagcgttg agaaacaagaggccactggtggtaaggtaaccaaagcagcccagaaagctcagaacaagaagtga |
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Protein
| Protein ID | pfu_aug1.0_7187.1_09507.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7187.1_09507.t1 MPKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIIAAGVGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTDP PYSELAKPTIHALESIPPVRTVQRRKILHSIGTVPVGRVETGILKPGTVVTFAPVNVTTEVKSVEMHHEALTEALPGDNV GFNVKNVSVKDIKRGNVAGDSKNDPPKGAKLFNAQVIVLNHPGQIHNGYAPVLDCHTAHIACKFAEIKEKVDRRSGKKLE DNPKFVKSGDAAMVDMIPQKPMCVEAFAEYAPLGRFAVRDMRQTVAVGVIKSVEKQEATGGKVTKAAQKAQNKK |
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