Gene
| Gene Model ID | pfu_aug1.0_7195.1_45598 |
|---|---|
| Locus | scaffold7195.1 : 18826 ... 27223 : + |
| To GenomeBrowser | scaffold7195.1:18826..27223 |
| Genes list of scaffold | scaffold7195.1 |
| Synonym | pfu_aug2.0_2210.1_02045 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | prostaglandin E2 receptor type 4 |
| Description | BLASTP top hit to AAP37289.1 [Rattus norvegicus] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7195.1_45598.t1 | 1 | 1 | 7TM_GPCR_Srx | 32 | 237 | 1.9e-13 | 50.1 | 6.5e-17 | 2.4e-13 | 49.8 |
| pfu_aug1.0_7195.1_45598.t1 | 1 | 1 | 7tm_1 | 37 | 256 | 1.3e-28 | 99.8 | 4.2e-32 | 1.5e-28 | 99.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7195.1_45598.t1 | gi|354482316|ref|XP_003503344.1| | PREDICTED: LOW QUALITY PROTEIN: prostaglandin E2 receptor EP4 subtype isoform X1 [Cricetulus griseus] | 2.0e-26 |
Transcript
| Transcript ID | pfu_aug1.0_7195.1_45598.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7195.1_45598.t1 atggaaaataccacagatttgaatcagcttattcttaacagctccacaactcaaaagattgatgaaaatattgtgatccc agctctattgtatttatttggatccggtggaaatatacttgcaatagtacttttatttgtttcgtcaaagcgccacaaat ggaagccgttttatcgactcgtgtttgcgcttgctttaacggatttgacagggaactttttggtgtatccgttcataatg atgagatatgcgtccgatttcacgtacgaatatccaaattcagtttgtcaacatgttgctttcatgttctctctctgctt cctgggatcagctttacttgtgatgatgatgtcgtttgacagattcctagcaattttgtttcctttcgtgtacaatacac ctaagaaaattctccggacacacatcttcatcataatctgttggtcaatacccgcaattgtgtgcatcctacctctggcc ggaattggaagagtgaaaatattctacccgggctcttggtgttttattgactttacgagtcatgttggtcatgacgaagc tatagcgtatatttacgccattcttggattgatcattttcattttgacactacttttcaatgccgctgtcatttttgcta tttgtcatagaatgtacgtgaaccggaaaaacttaggatcacagaaacgaataaaatcggacatttacgtaatttcattc ctacttgctatcgtcaccgtattcagcgtttgctggatgccactcatgtcgtactag |
|
Protein
| Protein ID | pfu_aug1.0_7195.1_45598.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7195.1_45598.t1 MENTTDLNQLILNSSTTQKIDENIVIPALLYLFGSGGNILAIVLLFVSSKRHKWKPFYRLVFALALTDLTGNFLVYPFIM MRYASDFTYEYPNSVCQHVAFMFSLCFLGSALLVMMMSFDRFLAILFPFVYNTPKKILRTHIFIIICWSIPAIVCILPLA GIGRVKIFYPGSWCFIDFTSHVGHDEAIAYIYAILGLIIFILTLLFNAAVIFAICHRMYVNRKNLGSQKRIKSDIYVISF LLAIVTVFSVCWMPLMSY |
|