Gene
| Gene Model ID | pfu_aug1.0_7197.1_45604 |
|---|---|
| Locus | scaffold7197.1 : 8719 ... 14035 : - |
| To GenomeBrowser | scaffold7197.1:8719..14035 |
| Genes list of scaffold | scaffold7197.1 |
| Synonym | pfu_aug2.0_204.1_13787 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7197.1_45604.t1 | 2 | 1 | TP6A_N | 3 | 18 | 1.4e-14 | 53.4 | 0.19 | 1400.0 | -1.0 |
| pfu_aug1.0_7197.1_45604.t1 | 2 | 2 | TP6A_N | 70 | 135 | 1.4e-14 | 53.4 | 7.6e-18 | 5.6e-14 | 51.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7197.1_45604.t1 | gi|6755624|ref|NP_036176.1| | meiotic recombination protein SPO11 isoform a [Mus musculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7197.1_45604.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7197.1_45604.t1 atgaatgaacaacgatacgaggagcagataataaaaaagctagaggatttgatattggagtttgtcagacaggttagcgt gtctacaccccctgtactcactcatatcaatagaactacgtgggaaaatgtcgactttaattcccaagtcggtctgtgca tgaaggatgagaatgtaaaattaacaagtgtcaggttcgactcgtggaaaagtgtgaataaattgagaatgctgatcaag gtcatctctatgatacaccaactgatgacctctggtcgctatgcaacaaagagagacctgtattaccaagacgccgaggg gatagggtctcagccgacactagatgacgctttggacaacgtctcctgtatgttacagatacctagatggcacctgcata tcctagctacatctaaaggatgcgtggcgggaaatctatccttcctagacgcggacggaagttacgtagattgcagcaag accaaaaacggaatactggtaccatctcacatcgaggctttgcatcaggttcatacaacggcaagattcttgctcatagt ggaaaaagacgctgtgttccaaaaactgcttgatgacaatttttgtgagcacatgaagccgtgtattttggtgacaggta aggggttcccagacataaatacaagaatgctgctgaatcgtatctggagagagaatcagttaccaatggcaatattggtt gacgcagattcatacggaatagaaataatgtgtgtctacaaattcggctctagatcctttcatttgaagccaagttcctc acagttccaaccataa |
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Protein
| Protein ID | pfu_aug1.0_7197.1_45604.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7197.1_45604.t1 MNEQRYEEQIIKKLEDLILEFVRQVSVSTPPVLTHINRTTWENVDFNSQVGLCMKDENVKLTSVRFDSWKSVNKLRMLIK VISMIHQLMTSGRYATKRDLYYQDAEGIGSQPTLDDALDNVSCMLQIPRWHLHILATSKGCVAGNLSFLDADGSYVDCSK TKNGILVPSHIEALHQVHTTARFLLIVEKDAVFQKLLDDNFCEHMKPCILVTGKGFPDINTRMLLNRIWRENQLPMAILV DADSYGIEIMCVYKFGSRSFHLKPSSSQFQP |
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