Gene
| Gene Model ID | pfu_aug1.0_72.1_00130 |
|---|---|
| Locus | scaffold72.1 : 31826 ... 45921 : + |
| To GenomeBrowser | scaffold72.1:31826..45921 |
| Genes list of scaffold | scaffold72.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | brachyury |
| Description | GenBank: ACI97437.1 brachyury [Lottia gigantea] |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | brachyury |
| Description | NCBI BLASTP hit to BAG68616 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_72.1_00130.t1 | 1 | 1 | T-box | 71 | 249 | 0.0 | 279.3 | 0.0 | 0.0 | 278.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_72.1_00130.t1 | gi|196049294|dbj|BAG68616.1| | brachyury [Saccostrea kegaki] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
Transcript
| Transcript ID | pfu_aug1.0_72.1_00130.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_72.1_00130.t1 atgttagattcagcaaccaagtgcgagattcaggcatttcccgagaaaaaagattcgcattctaccctattgaacttgga taacacccgtatcaatatgaaatcaggaactcagaccagctccggatcaagtgttagtcacctccttagtgccgtggaca gtgaaatgacagttggcagcgaaaagggggatcctaccgaaagacagctacaagtcaaactagaggataaagaattatgg ctcaaattcaaggaatttacaaatgaaatgattgtcaccaagaatggaaggaggatgtttccagtgttcaaagttggcat atcaggtttagatcccaatgccatgtacacattgttactggactttgtacaagtggacacccatcgctggaagtacgtca acggggactgggtggcggggggtaaggcagaaccggccgcacccaactgtgtctatatacacccagactcgcccaacttc ggtgcccactggatgaaggagacggtgtccttcagcaaagtgaaactgaccaataaattgaacggtggtggccagattat gttgaattccttacataaatatgaaccaagattacaccttgttaaagtaggagctaactcacagaagaaaagaatcagca gctttagttttccggaaacacagttcattgccgtaaccgcatatcaaaatgaggagataacggctctgaagataaagcat aatccatttgccaaagcctttttggacgccaaagaaagaccagaaggcagagagggatttgatgatggactagacggtca gcagaggtctctttctcatttgaccagtacctggtaccttactcccgggggtcattccttagttccccctcccgctcatc agtttcccaatgccttgaatttatcgtcacctcattgtgatcgccttagcctgaggaacgcccgggccacaccctattca catccataccagaggagatctcccccacacggtggatttccgcgggacatcaccgcaaacatacccgtcctgaacatctc agataactggatgtctacctcaagtcataatgttcttccggcaacacctccaacaccccagtctcaccaatacggcatgt ggatgagcagcccgatgggtaatttatcccctaatcagaactgtactgtgccgtacctccgctctgccaccaccggatat ccgttttcgtcaacaacgtcaccaatagcaagtgtccaatcaaatgtatcaggaacaaacaatggcataccggccacatc gtcgtatgaaccacacaagttcgaatcatgtgacatttcctcgtttacctcccctgtccgagatgtccgcagcagccacg catggagtcccctcacaccgcctcctatctga |
|
Protein
| Protein ID | pfu_aug1.0_72.1_00130.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_72.1_00130.t1 MLDSATKCEIQAFPEKKDSHSTLLNLDNTRINMKSGTQTSSGSSVSHLLSAVDSEMTVGSEKGDPTERQLQVKLEDKELW LKFKEFTNEMIVTKNGRRMFPVFKVGISGLDPNAMYTLLLDFVQVDTHRWKYVNGDWVAGGKAEPAAPNCVYIHPDSPNF GAHWMKETVSFSKVKLTNKLNGGGQIMLNSLHKYEPRLHLVKVGANSQKKRISSFSFPETQFIAVTAYQNEEITALKIKH NPFAKAFLDAKERPEGREGFDDGLDGQQRSLSHLTSTWYLTPGGHSLVPPPAHQFPNALNLSSPHCDRLSLRNARATPYS HPYQRRSPPHGGFPRDITANIPVLNISDNWMSTSSHNVLPATPPTPQSHQYGMWMSSPMGNLSPNQNCTVPYLRSATTGY PFSSTTSPIASVQSNVSGTNNGIPATSSYEPHKFESCDISSFTSPVRDVRSSHAWSPLTPPPI |
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