Gene
Gene Model ID | pfu_aug1.0_7216.1_31350 |
---|---|
Locus | scaffold7216.1 : 86 ... 4165 : - |
To GenomeBrowser | scaffold7216.1:86..4165 |
Genes list of scaffold | scaffold7216.1 |
Synonym | pfu_aug2.0_540.1_00869 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to MgC1q53. 71 bits, 8e-11 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7216.1_31350.t1 | 1 | 1 | C1q | 15 | 141 | 2.0e-16 | 60.1 | 1.5e-20 | 2.3e-16 | 59.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_7216.1_31350.t1 |
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Definition | - |
>pfu_aug1.0_7216.1_31350.t1 atgcaaacacccggcaaatctgttcttccagcagtgtcgttctttgctacctacgacagacgtggatatattttagcttt gaacgaaactgccatatttaccagagtactcagcaatgtcggaggtggatatgacgtcactacaggtaattttgtggctc cataccgcggtatctactccatatcagccactattatgagtgaaaacgacagtgacatccatattggcgtaatgaagaat gagaagctactgatgactctttacagcaatcgtaacacttacccacaatcctccgctacagttcatcttccgctggacat taacgacaggatatatctgatcagtaccttaaggccaaacaaaaaactgcatgtcttcccaaattcaccaaatttttaca atgctttttctggagctctcgttgttcttttatga |
Protein
Protein ID | pfu_aug1.0_7216.1_31350.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7216.1_31350.t1 MQTPGKSVLPAVSFFATYDRRGYILALNETAIFTRVLSNVGGGYDVTTGNFVAPYRGIYSISATIMSENDSDIHIGVMKN EKLLMTLYSNRNTYPQSSATVHLPLDINDRIYLISTLRPNKKLHVFPNSPNFYNAFSGALVVLL |