Gene
| Gene Model ID | pfu_aug1.0_7241.1_52916 |
|---|---|
| Locus | scaffold7241.1 : 90476 ... 115243 : + |
| To GenomeBrowser | scaffold7241.1:90476..115243 |
| Genes list of scaffold | scaffold7241.1 |
| Synonym | pfu_aug2.0_3503.1_12476 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7241.1_52916.t1 | 1 | 1 | RNA_pol_Rpb8 | 7 | 146 | 0.0 | 207.7 | 0.0 | 0.0 | 207.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7241.1_52916.t1 | gi|225711886|gb|ACO11789.1| | DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Lepeophtheirus salmonis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7241.1_52916.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7241.1_52916.t1 atggcgggggtgttgttcgaagatatttttgacgtaaaggacatcgatccagatgggaaaaagttcgacagggtatcaag actgttttgcgagtcggagtcgtttaaaatggacttgatattagatgtcaatacacagatttatcccatagatcttggag acaaattccgaatggttttagccaagaccctcagagaagatggcactccggatgacggagagtttaaccccactgatacc ggcccgtcacgagccgacagctttgaatacgtcatgtacggcaaagtgtaccgtatagaaggggacgacactgggccaga ctcgacaagactggccgcttatgtatcatatggtggacttttgatgcgtctccagggcgacgccaacaacttgcatggat tcgaggtcgattcgtacgtgtacttactcgtaaaaaagcttgctttctga |
|
Protein
| Protein ID | pfu_aug1.0_7241.1_52916.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7241.1_52916.t1 MAGVLFEDIFDVKDIDPDGKKFDRVSRLFCESESFKMDLILDVNTQIYPIDLGDKFRMVLAKTLREDGTPDDGEFNPTDT GPSRADSFEYVMYGKVYRIEGDDTGPDSTRLAAYVSYGGLLMRLQGDANNLHGFEVDSYVYLLVKKLAF |
|