Gene
| Gene Model ID | pfu_aug1.0_7256.1_38493 |
|---|---|
| Locus | scaffold7256.1 : 1 ... 25581 : + |
| To GenomeBrowser | scaffold7256.1:1..25581 |
| Genes list of scaffold | scaffold7256.1 |
| Synonym | pfu_aug2.0_494.1_14225 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7256.1_38493.t1 | 10 | 1 | TIG | 43 | 114 | 0.0 | 265.9 | 3.8e-14 | 1.9e-10 | 40.6 |
| pfu_aug1.0_7256.1_38493.t1 | 2 | 1 | G8 | 45 | 87 | 3.0e-26 | 91.6 | 0.26 | 1300.0 | -0.9 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 2 | TIG | 136 | 209 | 0.0 | 265.9 | 2.3e-12 | 1.1e-08 | 34.9 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 3 | TIG | 231 | 301 | 0.0 | 265.9 | 4.4e-14 | 2.2e-10 | 40.3 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 4 | TIG | 319 | 396 | 0.0 | 265.9 | 5.6e-18 | 2.8e-14 | 52.8 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 5 | TIG | 402 | 483 | 0.0 | 265.9 | 4.8e-19 | 2.4e-15 | 56.3 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 6 | TIG | 487 | 559 | 0.0 | 265.9 | 1.3e-12 | 6.7e-09 | 35.6 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 7 | TIG | 576 | 660 | 0.0 | 265.9 | 4.8e-18 | 2.4e-14 | 53.0 |
| pfu_aug1.0_7256.1_38493.t1 | 2 | 2 | G8 | 670 | 778 | 3.0e-26 | 91.6 | 1.2e-28 | 6.1e-25 | 87.4 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 8 | TIG | 1083 | 1113 | 0.0 | 265.9 | 0.056 | 280.0 | 1.5 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 9 | TIG | 1873 | 1923 | 0.0 | 265.9 | 0.16 | 810.0 | 0.1 |
| pfu_aug1.0_7256.1_38493.t1 | 10 | 10 | TIG | 1939 | 1976 | 0.0 | 265.9 | 0.36 | 1800.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7256.1_38493.t1 | gi|297482444|ref|XP_002692815.1| | PREDICTED: fibrocystin-L isoform X3 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7256.1_38493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7256.1_38493.t1 gtgttgccgacccagtggattctagtagctgtccaatgagcctcagcaccgtctctggatgctccgacgccgcaccgaca ggtggagatccaacaaagttcacattcgctttctactcttgcgctacaccaaccgtcacagcaatttcaccaaatagtgg gacgaccaacactgccatcacaataaccggaactggcttctcatcaaccaaatgtcataatgaggtcaagtttggctcaa acacatgcatcgtgagttcggctagcgagtctgagatacagtgtagtatcgactcaagtacatcacctcagatcggagtg ctcgaggaggtcagcttcaggttacagaatctaggaaatgccttgatacctatcgctagtcaagcatctcgttcgtttgg tttgaatcccctcgtcactgagattactccatcacgcggttctaaagctggtggtactagagtggtcttgaagggtaccg gttttgttggcaccgttaatgacgttcaagcaaccattggtggatactcggtggacatagttgatgtatcctataatatg gtggtcatcaataccaaagcctcggcaggcggtgataaggctctcgacctacaagtcagaatgccctccggtacatttgg ttcagctacctgtgcaatcctgtgtcagtttgtgtttgaccccatcgtgacccctgaagtgacctccgtcacaccgactt cactaaccggtgcttccacaactgtcactctaacaggctctaagtttggatcaacaacaacaaccagcgatttaaccgtt accattggtggagagtcctgtactcctacttctgtatcagacacatctatagaatgcaccgcaacaaatgttcctgcagg aagcaatgctgtggtcgtaaactttgcggagtttggtttagcggagggtagcgtgactataacgggagatgcaacggctt cgtccatatcacctagcacaggaagtactcacggtggtacatacctaaccatcagcggtaacggctttgttaatggttct acttcggtagatattgatggatcaccgtgcaccgtttcttccgtcacattgtcccagctggtgtgtgtgacaccgagcca tgcagcagctgctgtaaaagttactgtaacatctaacggacagacatacgctcagcaggactttacttatgatgcaggat ccacccctgacataacgtctatctccccgactgtcggctctgccggtaccactcttgtattaacaggcaccaacttcggt gccaccaatggtgacaatatagtgctcattgatggtacccagtgcaccgtgacttcatcatcgcctacgtcagttagctg tactataggatcaaaggctgtgggtacctataatgtactactgaaggtcaatgggaagggtgactctaacaacgataaga catttgagtaccaactggctatatcaggaatcaatccggcttcaggcagtacatcaggaggtcagacagtgacggtatct gggtcaggatttgattccaccgtacaggctacggtatgcggtaccgcgtgtatcgcaaaatctggagccacacaaaccac ttcacagtatgtctgtgtcacccctgactcaaccaatacagtgacccagtcatgtgacgtagtagtaactcaaaacagtg tgagtaaaactctggcaagcggttacgncctacgactcgtctatcaccccgaaataacaggcgtgtctccagctagggga ggtactggaggggggacaactcttactgtcacaggatcaggatttggaattgtaccaggagatgtcagtgtaacattgga gggtaatgcatgtactgtatccaccattaccgatacacaaatagtgtgtaccaccagcgctgcgtcgtccaccgtcagaa ctaaagtacgcgtagaacgtagcggaaatggaatcgctaaacagacaagtgctgacttccaatacatagatgtgtggtca tctacggccacatggggtgggttggctccccctactgacggagaccttgtggtcattgaaaaaggtcactccattctact ggacactaacaccgccaagatgaagatgctgctgatcaaagggggagaactgatatttgatgagcaggacttaacgctgg atgctgaaaatatcctagtgacggagggaggactcttccagattggcaccgaggcagaaccattccaacacaaggccacc gtattcctacggggacaccacagaacaaaggagttaccgatctacggcacaaagaatctgggtatcagagagggcaggct tgaactacacggggagtttgccacacagacttgtttccagggtcgttttggtgaagaaatcggtagtgaccagtttggag ctcacatattgattcatgctccacgaccaaacgagaacttagccgtcgcacatatagagaatattgaagtaaaacatggt ggacaagcattcagactgggacgatatccgatacattttcacttgcttggtgacatgaccgggtcatatgtcaaacgctg cagcattcatgaaacgttcaaccgagctgttaacgtgcacggtactcacaatgtacttatagaacacacggttatttttg acattatgggcggagccatgttccttgaggacggaatcgagacaggaaatacattccagtataatttggctatctttgtc catatgagctccagtctgttgaatgacgatgtcacgcctgcagcattttggtgcacaaatcctaacaatacctaccagca caacactgcggcaggcggtacccattttggtttctggtaccgtatgcacacacatcctgacggtccatctttcaccacat ctgtttgtggtagacatgttgaattgggaaaattttacaacaacaccgtacattcacaaggatggtttggactctggatt ttcgagacttacacaccgagacttggtagtggatgtggttcaacgaccaccaccccagctgtttttgataatatatttgt ctggaattgtgaaaaaggagtagaatttgtcaattctggtaccctccaacttgtaaattcctaccttgttaataataaat tggcaggattcgaagttaaactgaaagtagaaggtccagattacactgacgatacgttattgatgaagaatacaatggtt gtgggccatgctacgtcccttacacgtactgagcagggatgtactagaggcgctgtcgtcataccgtacggatccggatt tgtagtcgctgattcaacatttgtcaacttcgacgaatctaactgtgctgcatttgcctggacaaggatcacaggtacct gttctactttctgcggaggttacacttctctcaccaaaggattacgctttgtcaatgcagataacaagggtaattatgga tggacatttgaaggacaaataaaggaccaggacggtactttgatcggagaaacggcatctacagccaacgtcggcgacaa tacggtgacgctcagcgagccggtagaatggcaagtaggaaacgatattgtagtaacacctacgggttatagcccctggg aagccgagacgttccgaattacagcggtatctgtaggcaagactgtcctgacactgaacgacaccttaaggttcagacat atatgtatggagacaaattcagacaacacccagttccgtcgtaatctgtgtactctcgtacaatgggaggggtcatacct tgatcgtgctgagccacttaacgtacgatataacggagctttcagcgctatcaaagccaccaatcttatatttgagggaa atcgtgtagccggtacggagaggatgggatttgcactacccccagaatcttgtacctccacccccaccaacccttacatg ggcaatgaagtacacacagctctcttaggacttgctatacatcctaaattagaattgacatggtcagagagttgcctgaa gtattccaacttcacgatctggaaatgtgtggattatggggtgtacattaaccatggtactagtatggtagtcgatcaga tgaagctagccgacaacaaaaacaacatctacacttttgtttctggacccgccgcattgtcacatgcatacgctgataaa actacaaccatcacgaattcgttgatagttggccgatcatcatcgtttgactgtaccgcagacgttattgacggtaacga tgtcaatatacagctgagtggaaacagtcgtccatgtgttggcggtgctcacatgggaatcgttatttctacattctcca gcggcagcaacaacgcccctgttaaaccattctgtggtattatgtcataccaagcaatcaagggacagtcctatataaga gatgtgacgtttagccgattccaggcacagtgtggtcagcaggaccgagcgatcgttcctccccagccaaacgacgatgg tatacatccgctagaggtttctggactgacgtttatagatacaccaagcgacaacaagtacagaaacgggcgtgctaatg ttggagctattaattcagctgactgtgtagacatggcttgcgatggtttactgaaggtcctggtggacgatattgacggt tctttccttggtacccgcggaatggttatatcacagtcagagtttgagtataacggagacaggagacgcggactcggaga ctatagaattcctaaggagatgttaacaaggctagatggtacaaggattccgtatagaacactggctccttaccaaggta ttattcgtaaccctggtgccacatataacagtgcttggcaggcgtatcaagtccacggtcttgaatataaaatgatgact ttggagagtttggacagcgacacggaaacacgtagactgtcgcctatagcggtactcagtgacggctacctagatcttat aaacggccctcaggatcacggatggtgcagcggttatacatgtagaaantcgccccaagacacaaggttcatgctcctca atagtaacagctcccacgctgtccgtctgtccatctggtacgctcatccaaacagattggacctgtacgtagacggaaca tacatcatgcccaaaaatggccgtatggaaggtcccaccaatgacaagaaactgatcctggatccacccccgcagtccga tcctgattactacatgcccgttgtcggaacggattctgccggttctaatttcttcaatcgtaactcgggaatattcactt tccttttggttggcggaaatagcgagtacataattaagacacaaaataccatcatagtctctcaccagttccctccgatg acggttgatgaattctttggacaaaatattgtccagaatttagctgcgttcttgaatattccagcgagtaaagttcgcgt aacagacgtcataccagaaaatcaggtagcagggaagaggaagaagagagctacaggaagtgatgtcattgtgggtgcta tagtagaagtgggaaatgcccctagtccagatatcaatggcacagtatccggggacctgacggatacccagatcacggac gctggcgtcaaaatctccaacgaaatccagcttggtaactatagcgagattgtcaacaccagctcgtctaccacctactc catcgctacgtccccgccctccaccgattccgaggagtgggctaaccagggcacagagagtccatacacagtactgtatc aggtagacgccatgaggtttaaccctaagataacacccctacacgagggagcacccttctctacgcagcctaaagtacag attctagacgcaaacggaaatccaatcaaaaataaatcgccatggcaactaacggccacaataagagcagggacaggtaa ccctagcgcccagctccttggcaacacgagcgtgacctttgtagatggatgggcaaatttcactgggatgtacattacac attttggtacagattacatcattgacttcaacattactgacccagtggaaggtgaaaatgtgaccttggcctctgacccc ctgacaatccaaggtcgtccaatcacagctgctcttgtatccaagtctacagatattgtcgagagaaattacttgtcggc ggtattagagctgagagattccgtcacatcggaggttatttcagacattgcatggaggggtcatacatggacagccaatg ccacactcggtatgcccgaactctataatggaacactagagggttctttagtcgtgacctttgacccttcatcaggtcaa gcccagttctactctctaaacatcacaaacttgggagcctacgtcgtcaaatttcacataacttcgaatccacccgatta tgactttacgcatgaagaattaatcacggttaaagctctcagtcacattggcttggtaattgaggaacaaaaggacattg tggtgaagtttaacgaagattacaatacgatcgttgggagcagtaataacaagtattttgcagctatgatgggcaactac ttgtccaacatgtatcaagacgttattacaagctctataacagtggtgccaggcagtattatagtcactttccaacattg a |
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Protein
| Protein ID | pfu_aug1.0_7256.1_38493.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7256.1_38493.t1 VADPVDSSSCPMSLSTVSGCSDAAPTGGDPTKFTFAFYSCATPTVTAISPNSGTTNTAITITGTGFSSTKCHNEVKFGSN TCIVSSASESEIQCSIDSSTSPQIGVLEEVSFRLQNLGNALIPIASQASRSFGLNPLVTEITPSRGSKAGGTRVVLKGTG FVGTVNDVQATIGGYSVDIVDVSYNMVVINTKASAGGDKALDLQVRMPSGTFGSATCAILCQFVFDPIVTPEVTSVTPTS LTGASTTVTLTGSKFGSTTTTSDLTVTIGGESCTPTSVSDTSIECTATNVPAGSNAVVVNFAEFGLAEGSVTITGDATAS SISPSTGSTHGGTYLTISGNGFVNGSTSVDIDGSPCTVSSVTLSQLVCVTPSHAAAAVKVTVTSNGQTYAQQDFTYDAGS TPDITSISPTVGSAGTTLVLTGTNFGATNGDNIVLIDGTQCTVTSSSPTSVSCTIGSKAVGTYNVLLKVNGKGDSNNDKT FEYQLAISGINPASGSTSGGQTVTVSGSGFDSTVQATVCGTACIAKSGATQTTSQYVCVTPDSTNTVTQSCDVVVTQNSV SKTLASGYXLRLVYHPEITGVSPARGGTGGGTTLTVTGSGFGIVPGDVSVTLEGNACTVSTITDTQIVCTTSAASSTVRT KVRVERSGNGIAKQTSADFQYIDVWSSTATWGGLAPPTDGDLVVIEKGHSILLDTNTAKMKMLLIKGGELIFDEQDLTLD AENILVTEGGLFQIGTEAEPFQHKATVFLRGHHRTKELPIYGTKNLGIREGRLELHGEFATQTCFQGRFGEEIGSDQFGA HILIHAPRPNENLAVAHIENIEVKHGGQAFRLGRYPIHFHLLGDMTGSYVKRCSIHETFNRAVNVHGTHNVLIEHTVIFD IMGGAMFLEDGIETGNTFQYNLAIFVHMSSSLLNDDVTPAAFWCTNPNNTYQHNTAAGGTHFGFWYRMHTHPDGPSFTTS VCGRHVELGKFYNNTVHSQGWFGLWIFETYTPRLGSGCGSTTTTPAVFDNIFVWNCEKGVEFVNSGTLQLVNSYLVNNKL AGFEVKLKVEGPDYTDDTLLMKNTMVVGHATSLTRTEQGCTRGAVVIPYGSGFVVADSTFVNFDESNCAAFAWTRITGTC STFCGGYTSLTKGLRFVNADNKGNYGWTFEGQIKDQDGTLIGETASTANVGDNTVTLSEPVEWQVGNDIVVTPTGYSPWE AETFRITAVSVGKTVLTLNDTLRFRHICMETNSDNTQFRRNLCTLVQWEGSYLDRAEPLNVRYNGAFSAIKATNLIFEGN RVAGTERMGFALPPESCTSTPTNPYMGNEVHTALLGLAIHPKLELTWSESCLKYSNFTIWKCVDYGVYINHGTSMVVDQM KLADNKNNIYTFVSGPAALSHAYADKTTTITNSLIVGRSSSFDCTADVIDGNDVNIQLSGNSRPCVGGAHMGIVISTFSS GSNNAPVKPFCGIMSYQAIKGQSYIRDVTFSRFQAQCGQQDRAIVPPQPNDDGIHPLEVSGLTFIDTPSDNKYRNGRANV GAINSADCVDMACDGLLKVLVDDIDGSFLGTRGMVISQSEFEYNGDRRRGLGDYRIPKEMLTRLDGTRIPYRTLAPYQGI IRNPGATYNSAWQAYQVHGLEYKMMTLESLDSDTETRRLSPIAVLSDGYLDLINGPQDHGWCSGYTCRXSPQDTRFMLLN SNSSHAVRLSIWYAHPNRLDLYVDGTYIMPKNGRMEGPTNDKKLILDPPPQSDPDYYMPVVGTDSAGSNFFNRNSGIFTF LLVGGNSEYIIKTQNTIIVSHQFPPMTVDEFFGQNIVQNLAAFLNIPASKVRVTDVIPENQVAGKRKKRATGSDVIVGAI VEVGNAPSPDINGTVSGDLTDTQITDAGVKISNEIQLGNYSEIVNTSSSTTYSIATSPPSTDSEEWANQGTESPYTVLYQ VDAMRFNPKITPLHEGAPFSTQPKVQILDANGNPIKNKSPWQLTATIRAGTGNPSAQLLGNTSVTFVDGWANFTGMYITH FGTDYIIDFNITDPVEGENVTLASDPLTIQGRPITAALVSKSTDIVERNYLSAVLELRDSVTSEVISDIAWRGHTWTANA TLGMPELYNGTLEGSLVVTFDPSSGQAQFYSLNITNLGAYVVKFHITSNPPDYDFTHEELITVKALSHIGLVIEEQKDIV VKFNEDYNTIVGSSNNKYFAAMMGNYLSNMYQDVITSSITVVPGSIIVTFQH |
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