Gene
| Gene Model ID | pfu_aug1.0_7256.1_38494 |
|---|---|
| Locus | scaffold7256.1 : 26293 ... 29395 : - |
| To GenomeBrowser | scaffold7256.1:26293..29395 |
| Genes list of scaffold | scaffold7256.1 |
| Synonym | pfu_aug2.0_494.1_14226 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7256.1_38494.t1 | 2 | 1 | zf-C3HC4 | 25 | 70 | 4.8e-07 | 29.3 | 2.9e-10 | 4.8e-07 | 29.3 |
| pfu_aug1.0_7256.1_38494.t1 | 2 | 1 | zf-B_box | 107 | 155 | 2.7e-10 | 39.9 | 2.0e-08 | 3.3e-05 | 23.6 |
| pfu_aug1.0_7256.1_38494.t1 | 2 | 2 | zf-C3HC4 | 111 | 144 | 4.8e-07 | 29.3 | 0.023 | 38.0 | 4.0 |
| pfu_aug1.0_7256.1_38494.t1 | 2 | 2 | zf-B_box | 172 | 205 | 2.7e-10 | 39.9 | 1.3e-10 | 2.2e-07 | 30.6 |
| pfu_aug1.0_7256.1_38494.t1 | 2 | 1 | NHL | 391 | 414 | 2.4e-10 | 39.8 | 1.6e-07 | 0.00026 | 20.8 |
| pfu_aug1.0_7256.1_38494.t1 | 2 | 2 | NHL | 538 | 562 | 2.4e-10 | 39.8 | 2.6e-06 | 0.0042 | 16.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7256.1_38494.t1 | gi|291221599|ref|XP_002730807.1| | 1.0e-31 |
Transcript
| Transcript ID | pfu_aug1.0_7256.1_38494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7256.1_38494.t1 atgaacggtcacagtgaaaatcacatggtcaatggcgacacagaaaacaacttaatggagcagacgatcgtctgtaacct ttgtaaggggaacttaaaatcacccaaactacttaattgtctccatagtttttgtatgtcatgtttggaggagtatatcg ttaaagctttaaaccagaatggacagcgatatttcgagtgtccatcttgtggtttggaaattgagcttccgtcgtccgct ctaccagggcagtacgcaaattctttcccagaggacacttttttgagcaaagtaatagaattaaaggatgccatgaaaga agataaaacttgtgatatttgcgaaagacttgaggaaagaatatccgctgccagtttttgtatggactgtaacgacgcta tgtgtgaaaattgtcttaaggtacatttgcacgggaagcttacttccggtcacacggttatgtccatcgcagaaatgaga aaaatgccgctagagaatattatgaagcagaaaaacaaagttccgtgtgagaagcataacgagttgataacgctcttttg cgtggactgtaaagaaccaatttgtgttcagtgtatggcggtatcgcatcgtcgatgcgaaaatgtcgtcacggtggccg atgcgatatcgtcacgttccgacgtcagcgatgtcgtcatacgacttcagaagctgcaagtatcagccgataactcaaac ggcgacagtgatgcgaacaaacttttagaagaaagcatcgagcaatctagagctaagattactgacacgtgcaatgccct atgcgagaaagttcgtcagcaacaggccgtattactcaaaagtctagatgactgcgtccttcaagccaagaaaaccttaa agggtcgattagaaccccgaaaaataggcgcaaaatccatcaagacagcgaacgaccggatgcagatgatgatggcatac ggaagtgacgtagagattttacttgcgtataaccaagtgcgcaaacaactagattcgagccaaggtgctatcagcaactc cgatccgaattcagtaagtgttaaggttgaggttgctctggacgatttggtagagaaattcatgtcggagtttgagaaga taggggaagtttcgctggagatcggcggatctgacgaggggttaaactcctggggcgtcacctgtacgtcaacagatgac atcatagtaacagactgcaaaaacaagaggatccaaaagttcagcaagtttggcgatttggtagactatgtacagcttga ggacgaaccacgtgacattaccacgtgtggtaaccgtgacgacgttgccataacgatgattggtaaattaattatattct tagcaacaaggagaacaatgcagttgataaaacgcgccaagacagagcgacagtacgatggaatatgttactcgaccagg gacgccttccttgtcgttagcagtatacgggaccgagtcgtggacattgtacagctggacggaagtgtgctgaaatctat cgtttctgacttgggtcaaggcgccgtagttggtgttacgcaatcaggcaagcacgtgttccagtacaaaccggaaggaa gtaaagctctgaagaagccacaaggcgcatgcgtagacgtcatcggaaatttgttcgtagcggaccatggaaatgaccgt gtacaattgttgactaacgacggacattttcagaggcttgtcctagaatctgacagcggacttgaaaaacccgtagctat acgggtcagtggaagtaataggatggtcatagttcaaggtgatggaatggtgaaagtgttcagttatacgtga |
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Protein
| Protein ID | pfu_aug1.0_7256.1_38494.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7256.1_38494.t1 MNGHSENHMVNGDTENNLMEQTIVCNLCKGNLKSPKLLNCLHSFCMSCLEEYIVKALNQNGQRYFECPSCGLEIELPSSA LPGQYANSFPEDTFLSKVIELKDAMKEDKTCDICERLEERISAASFCMDCNDAMCENCLKVHLHGKLTSGHTVMSIAEMR KMPLENIMKQKNKVPCEKHNELITLFCVDCKEPICVQCMAVSHRRCENVVTVADAISSRSDVSDVVIRLQKLQVSADNSN GDSDANKLLEESIEQSRAKITDTCNALCEKVRQQQAVLLKSLDDCVLQAKKTLKGRLEPRKIGAKSIKTANDRMQMMMAY GSDVEILLAYNQVRKQLDSSQGAISNSDPNSVSVKVEVALDDLVEKFMSEFEKIGEVSLEIGGSDEGLNSWGVTCTSTDD IIVTDCKNKRIQKFSKFGDLVDYVQLEDEPRDITTCGNRDDVAITMIGKLIIFLATRRTMQLIKRAKTERQYDGICYSTR DAFLVVSSIRDRVVDIVQLDGSVLKSIVSDLGQGAVVGVTQSGKHVFQYKPEGSKALKKPQGACVDVIGNLFVADHGNDR VQLLTNDGHFQRLVLESDSGLEKPVAIRVSGSNRMVIVQGDGMVKVFSYT |
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