Gene
| Gene Model ID | pfu_aug1.0_726.1_22266 |
|---|---|
| Locus | scaffold726.1 : 74866 ... 96703 : + |
| To GenomeBrowser | scaffold726.1:74866..96703 |
| Genes list of scaffold | scaffold726.1 |
| Synonym | pfu_aug2.0_836.1_21196 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_726.1_22266.t1 | 1 | 1 | zf-C3HC4_2 | 34 | 73 | 2.9e-07 | 30.4 | 2.3e-10 | 2.9e-07 | 30.4 |
| pfu_aug1.0_726.1_22266.t1 | 4 | 1 | zf-TRAF | 63 | 78 | 1.1e-23 | 83.2 | 0.92 | 1100.0 | 0.0 |
| pfu_aug1.0_726.1_22266.t1 | 4 | 2 | zf-TRAF | 75 | 123 | 1.1e-23 | 83.2 | 0.00014 | 0.18 | 12.2 |
| pfu_aug1.0_726.1_22266.t1 | 3 | 1 | Sina | 101 | 151 | 7.5e-06 | 25.7 | 4.5e-07 | 0.00055 | 19.6 |
| pfu_aug1.0_726.1_22266.t1 | 4 | 3 | zf-TRAF | 123 | 178 | 1.1e-23 | 83.2 | 1.6e-11 | 2.0e-08 | 34.5 |
| pfu_aug1.0_726.1_22266.t1 | 3 | 2 | Sina | 137 | 174 | 7.5e-06 | 25.7 | 0.0073 | 9.1 | 5.8 |
| pfu_aug1.0_726.1_22266.t1 | 4 | 4 | zf-TRAF | 181 | 232 | 1.1e-23 | 83.2 | 6.6e-17 | 8.1e-14 | 51.7 |
| pfu_aug1.0_726.1_22266.t1 | 3 | 3 | Sina | 182 | 256 | 7.5e-06 | 25.7 | 6.4e-05 | 0.079 | 12.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_726.1_22266.t1 | gi|291223095|ref|XP_002731549.1| | PREDICTED: TNF receptor-associated factor 3-like isoform X1 [Saccoglossus kowalevskii] | 4.0e-33 |
Transcript
| Transcript ID | pfu_aug1.0_726.1_22266.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_726.1_22266.t1 atgcagaagtcgtcagtattatcgtcaatggaaagttccatgagatcacctagtgatatacatgtaccagagtttataga tctaccgaaaggatatgtatgtatcatatgtgcatcagtactcaggaatgcaatgcagttgccctgcggtcatttattgt gcgagactccgtgtgttgacgtattgtttgacaacaaagaagaagctacatgtccgattagagaggaagactgccttgaa ccatttaagaaaagagaggtgtttaaagatgtgtgtaccagaaaagaggtcctattgcttaaagtgtattgtccttacag aaagcagggatgcaaagaaaaatttccatggagggttttaaataaacatgttgctgaatgtcagttccgactagtgccat gtccaaatgagggatgtaatgaacagatatcagcaaaccaactcgaagagcatagacttaaaatgtgtctgtacagacct gttatttgtgaatattgtggacaaaccataccagaatgcgaactcaagaagcattacttggatgtttgtgaaaaaatacc aataccttgtccaaacaaatgtggcataggaaaattacccagaaatcagatgactgaacatgtaaaagtgtgtcccatgg cacctagatcatgcgcatacaagagcattggctgcaaatttgagaccattaaggaggagagagacaggttgaagaaagct attgatgatatgcatgaaacaaatagaaaaatgaaggaggaggttgatatgttcaacaaagattttacaaaggaattgaa ggtctatatcacttag |
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Protein
| Protein ID | pfu_aug1.0_726.1_22266.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_726.1_22266.t1 MQKSSVLSSMESSMRSPSDIHVPEFIDLPKGYVCIICASVLRNAMQLPCGHLLCETPCVDVLFDNKEEATCPIREEDCLE PFKKREVFKDVCTRKEVLLLKVYCPYRKQGCKEKFPWRVLNKHVAECQFRLVPCPNEGCNEQISANQLEEHRLKMCLYRP VICEYCGQTIPECELKKHYLDVCEKIPIPCPNKCGIGKLPRNQMTEHVKVCPMAPRSCAYKSIGCKFETIKEERDRLKKA IDDMHETNRKMKEEVDMFNKDFTKELKVYIT |
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