Gene
| Gene Model ID | pfu_aug1.0_7309.1_02420 |
|---|---|
| Locus | scaffold7309.1 : 9436 ... 36219 : + |
| To GenomeBrowser | scaffold7309.1:9436..36219 |
| Genes list of scaffold | scaffold7309.1 |
| Synonym | pfu_aug2.0_860.1_01193 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7309.1_02420.t1 | 1 | 1 | Pkinase_Tyr | 71 | 219 | 3.9e-08 | 32.6 | 4.4e-11 | 9.3e-08 | 31.4 |
| pfu_aug1.0_7309.1_02420.t1 | 1 | 1 | Pkinase | 72 | 218 | 2.6e-07 | 30.0 | 1.6e-09 | 3.4e-06 | 26.4 |
| pfu_aug1.0_7309.1_02420.t1 | 3 | 1 | HEAT | 348 | 376 | 1.0e-11 | 43.8 | 0.05 | 110.0 | 3.3 |
| pfu_aug1.0_7309.1_02420.t1 | 3 | 2 | HEAT | 387 | 411 | 1.0e-11 | 43.8 | 6.3e-06 | 0.013 | 15.4 |
| pfu_aug1.0_7309.1_02420.t1 | 3 | 3 | HEAT | 505 | 533 | 1.0e-11 | 43.8 | 2.1e-06 | 0.0044 | 16.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7309.1_02420.t1 | gi|260791732|ref|XP_002590882.1| | hypothetical protein BRAFLDRAFT_101148 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7309.1_02420.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7309.1_02420.t1 atgcacaaaattgttttttcatcaatattcagagcaaaattattttttcggaaaaaaaacaagcttcaacgcacagtgga aaatctattcccatcagcgaaaaaaagcaggaaatctattcctgtctgcagaaaatatattcccatctgcgggaaattta ttcctctggtgtccatggtgatcaaggtacaagtagccaaaggagctttcaaaaggattaaaactttacggcatccaaac tttgtcacattcctagacggagttgagacagacaaggtgatctactttgccactgaacctgttgttccattagaaaactt cctgactgcaagtaatgataaccgtaatgagctagcaatctcctggggtttgcatcaagtagcgaaaggtctgtccttcc ttgtgaatgactgtaacctgatacataacaatgtgtgtatggctgccatatttgttgacatcgctggggactggaagata ggaggagtggaatatatgtaccccacccaggggcaggaaagtgtccctcctgtgaagatcctccctgtactagagaaacg atacataaagaatttcatttcagaacgttttgatcggtccacagatatgtggggattaggttgtttgatatgggaggtgt ttaatggacctctgactcagacttcagcccttaaaaactttggaaagattgccaagccacttgtccctaattattgtgag ttagttggtgctaatccaaaatccaggccaaatccctctaaattcctggaaaaatgtaaaagtcccaaaggtttcatgga caattcatttgtcaaaacaatgctcttcatggaagaaatccagatcaaagatcaaagtgagaagaccaaattttttggca cattagctccgtcccttgattctttccctgcagaatgctgtaagaataagatcctccctctgctacttaatgcttttgaa tatggagatgctggatccgccgtcctggctcctctcttcaagattggaaagctcctgagcatggacgaataccagaagaa aattgtaccgtgtgtggttaaactgttcagctccactgatagagccactagagtcaaacttctacagcagattgatacat tcatagaatacctacagccagacacagttaatgctcagattttccctcatatcatacatggctttacagacaccaaccct gtcgtcagagaaagcactatcaaggcaatgctatttgttgctcctaagttaaatcacaaaaacctaaatgaggaagtgat gaaacattttgcacgtctccagtcaaaagatgatcagggtggtataagaaccaacacgacagtatgccttggtaagattg cctgctatctcaacccacaggtgagacagaaaatgatatcttcggcattcctccgagctatgaaggacccgtttccacct gcacgtcaagcagggattctgggaatggcaaccacacagaatttcttcacactgaacgagatagctcatcgcttactgcc agctctgtgtaccatgacacgagatccagaatccactgtcagagaacaggcattcaaatcaataaaaggattcatatcaa aactggaaaaagtatcagacaatccagatttagaagcagagatggagaaggatgtattaagtggtggatcctcagtgtct agcagtgcagccagctgggcaggatgggctgtgggaggaatgtcctctatcacatccaaactctacaagaaaggagacaa agccaaaacagacctcaagaagcccctgtctggagcctcaccaagcacacctgtaccagaatctcaacctaccaatcagg tggcctctaacaagcctgaccagtcaaactcaacagagccagatcaaggggtggatcaggaggtggaggggtgggatgat gaagactggggtgatatagagccaatttgtaactttgtttctagagtagtcctgtatcgtcacccactacaacatcagcc ccaaccaggaacacagatggctgggataataacgatgatgaggatgaagaagaatgaagatgatgatgataactgggaga gcttagaggacacaaaacctaaaaatcaaggttccctgaagcttaaccagcaacccaagaagccagatgactggggtgat agttttggttttgagtttgagtctacagacagtagtggtttacagccggcaagtgattataactggggagaaacaaatac agagtctagtcaagatgacttcttctcctcagccatgggactgcctacgaagaaaacacagagtgcaatacaatctaaga caaggacttaccctcctcggtctacgtcgtcaagtaatacgtcatcagctcgggcaagccccgcccgtaatgtgtctagt cagaaacaaaaacagagtaattctgatagtgggtggggtgtggaggactcaggatggggcacggacgactggggaaatgt gggatctacaaataaaacgacagtgcaaacaaggcagaaacaaaatacaaggaaatctcctcctcagtcccatggtgctc agcaaacaggaagtggtactagcagtgcaggttgggaaagtggttggggtgaggaggacacagactgggggagtatgtca tcaggtacaaacaaacttgatgaagctcaaagaaaaaaagaagaaagagaggagaagagacgacagcgacaacaagagtt acatgagaaacgggaggctaaaaagggaggcggagctctaaaactgggagcgaaaaaacttgcagctgactga |
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Protein
| Protein ID | pfu_aug1.0_7309.1_02420.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7309.1_02420.t1 MHKIVFSSIFRAKLFFRKKNKLQRTVENLFPSAKKSRKSIPVCRKYIPICGKFIPLVSMVIKVQVAKGAFKRIKTLRHPN FVTFLDGVETDKVIYFATEPVVPLENFLTASNDNRNELAISWGLHQVAKGLSFLVNDCNLIHNNVCMAAIFVDIAGDWKI GGVEYMYPTQGQESVPPVKILPVLEKRYIKNFISERFDRSTDMWGLGCLIWEVFNGPLTQTSALKNFGKIAKPLVPNYCE LVGANPKSRPNPSKFLEKCKSPKGFMDNSFVKTMLFMEEIQIKDQSEKTKFFGTLAPSLDSFPAECCKNKILPLLLNAFE YGDAGSAVLAPLFKIGKLLSMDEYQKKIVPCVVKLFSSTDRATRVKLLQQIDTFIEYLQPDTVNAQIFPHIIHGFTDTNP VVRESTIKAMLFVAPKLNHKNLNEEVMKHFARLQSKDDQGGIRTNTTVCLGKIACYLNPQVRQKMISSAFLRAMKDPFPP ARQAGILGMATTQNFFTLNEIAHRLLPALCTMTRDPESTVREQAFKSIKGFISKLEKVSDNPDLEAEMEKDVLSGGSSVS SSAASWAGWAVGGMSSITSKLYKKGDKAKTDLKKPLSGASPSTPVPESQPTNQVASNKPDQSNSTEPDQGVDQEVEGWDD EDWGDIEPICNFVSRVVLYRHPLQHQPQPGTQMAGIITMMRMKKNEDDDDNWESLEDTKPKNQGSLKLNQQPKKPDDWGD SFGFEFESTDSSGLQPASDYNWGETNTESSQDDFFSSAMGLPTKKTQSAIQSKTRTYPPRSTSSSNTSSARASPARNVSS QKQKQSNSDSGWGVEDSGWGTDDWGNVGSTNKTTVQTRQKQNTRKSPPQSHGAQQTGSGTSSAGWESGWGEEDTDWGSMS SGTNKLDEAQRKKEEREEKRRQRQQELHEKREAKKGGGALKLGAKKLAAD |
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