Gene
| Gene Model ID | pfu_aug1.0_7309.1_02421 |
|---|---|
| Locus | scaffold7309.1 : 39778 ... 50675 : - |
| To GenomeBrowser | scaffold7309.1:39778..50675 |
| Genes list of scaffold | scaffold7309.1 |
| Synonym | pfu_aug2.0_860.1_01195 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7309.1_02421.t1 | 1 | 1 | FAD_binding_3 | 41 | 229 | 1.1e-06 | 28.0 | 3.2e-10 | 2.4e-06 | 26.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7309.1_02421.t1 | gi|55741992|ref|NP_001006829.1| | ubiquinone biosynthesis monooxygenase COQ6, mitochondrial [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7309.1_02421.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7309.1_02421.t1 atgacagccaaggtcttgagaagttaccggttgtgtaaatctgtgttaagacattttagatctttatcaggatgtggtag aggtgttcatacaacagttattgataatgatgccgaaacagctgacattgtcatatctggaggagggatggtggggacag caatggcctgtgcacttggtaacgagccacatttagctgacaaaagaatagttctacttgaatctgcaccaaagaaggaa ttcacattaccagagaattacagtaacaggacatgtacagttagtccttctacagtaaatctgcttaacagttttggtgc atgggatgagatcctacagatgagatgtcaaccagtaaagagaatgcaggtatgggaatcctgttctgactccctgatca cgtttaacaaggatgatatgatgggagacctcgcttttgtcgtagagaatgacgttatcctagaggctacgaggcggagt ctcactgccatgggtgatagggtagatgtcatgtataatacgtcagccagctcttacatcataccgggggtcacggcagg tcataaaaacgtcaaccaaaactcatgggtcactatagcaaccaatgatggcaagacaataaagaccaaattattgatag gtgcagatggtatgaactctggtgtaaggaaagctggggaattccatacagtcaagtgggattataaacaactggcatta gtagctactctacatgtcactggtgttaagattcagcccacagaattcaccctttggctggtcagggagttaaccttggc ttcggggatgtcagctgtttacgtgatatcttag |
|
Protein
| Protein ID | pfu_aug1.0_7309.1_02421.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7309.1_02421.t1 MTAKVLRSYRLCKSVLRHFRSLSGCGRGVHTTVIDNDAETADIVISGGGMVGTAMACALGNEPHLADKRIVLLESAPKKE FTLPENYSNRTCTVSPSTVNLLNSFGAWDEILQMRCQPVKRMQVWESCSDSLITFNKDDMMGDLAFVVENDVILEATRRS LTAMGDRVDVMYNTSASSYIIPGVTAGHKNVNQNSWVTIATNDGKTIKTKLLIGADGMNSGVRKAGEFHTVKWDYKQLAL VATLHVTGVKIQPTEFTLWLVRELTLASGMSAVYVIS |
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