Gene
| Gene Model ID | pfu_aug1.0_73122.1_63774 |
|---|---|
| Locus | scaffold73122.1 : 1 ... 865 : - |
| To GenomeBrowser | scaffold73122.1:1..865 |
| Genes list of scaffold | scaffold73122.1 |
| Synonym | pfu_aug2.0_692.1_07802 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_73122.1_63774.t1 | 2 | 1 | HSP20 | 53 | 137 | 7.8e-35 | 118.8 | 2.4e-22 | 1.7e-18 | 66.3 |
| pfu_aug1.0_73122.1_63774.t1 | 2 | 2 | HSP20 | 186 | 260 | 7.8e-35 | 118.8 | 3.9e-18 | 2.9e-14 | 52.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_73122.1_63774.t1 | gi|353230032|emb|CCD76203.1| | putative heat shock protein-HSP20/alpha crystallin family [Schistosoma mansoni] | 3.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_73122.1_63774.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_73122.1_63774.t1 atggaaatgaaaatggagaaaagaagaaaagaatgggatgatgagtttgagaaaattaggaacgaatttttcacattgaa gcctagtgagaaacttggcgggaccgtagataaggtagataaccttagtacggtttacgaaactgaggcgtctggacgca ggtttaaggttcgattcgatgtgagtgaatttcgaccggaggaaatacaagtgaaagttcaagataacaaattatcggtg gcagcgagacacgaagagaaaaacaacaaatcgtcggtaagtcgtgaatattgccgacaagttgacattcccgatgacgt agatcaagaacggcttcagtgcgtacttagtaaagatggcatcttgaccgtcgacggtccagtgaaaggaacgctgatca tcaaacgtgagaccatgcttcctatacaacacggtcctctctcccctcagcctacatcctttaatcaagtagccatgatt tcgccgacgcctgcgcgtcccttagaggtcgcaactcccgttaagaacccgattattacggagcctgacggaacacggaa attgcgcttatccgttgacgtcggtgaattcaaacccgatgaaatcgtggtgaagacagcggagcggaagttgatcgttc acgccgagcatgaagaaaaactttctggacgtacgatgcacaaggagtttaataaggaatatgaacttccggagagtgtt gatcaatcggcaattacggcgtacatcggcgaggaaggaaagctattcgttgaagcgcctttgaaacc |
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Protein
| Protein ID | pfu_aug1.0_73122.1_63774.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_73122.1_63774.t1 MEMKMEKRRKEWDDEFEKIRNEFFTLKPSEKLGGTVDKVDNLSTVYETEASGRRFKVRFDVSEFRPEEIQVKVQDNKLSV AARHEEKNNKSSVSREYCRQVDIPDDVDQERLQCVLSKDGILTVDGPVKGTLIIKRETMLPIQHGPLSPQPTSFNQVAMI SPTPARPLEVATPVKNPIITEPDGTRKLRLSVDVGEFKPDEIVVKTAERKLIVHAEHEEKLSGRTMHKEFNKEYELPESV DQSAITAYIGEEGKLFVEAPLK |
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