Gene
| Gene Model ID | pfu_aug1.0_7354.1_09543 |
|---|---|
| Locus | scaffold7354.1 : 6215 ... 14675 : - |
| To GenomeBrowser | scaffold7354.1:6215..14675 |
| Genes list of scaffold | scaffold7354.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7354.1_09543.t1 | 2 | 1 | EF-hand_7 | 69 | 127 | 4.3e-22 | 78.0 | 4.9e-10 | 6.5e-07 | 29.3 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 1 | EF-hand_6 | 69 | 96 | 1.5e-17 | 61.7 | 4.9e-08 | 6.6e-05 | 22.4 |
| pfu_aug1.0_7354.1_09543.t1 | 4 | 1 | EF-hand_1 | 70 | 94 | 2.8e-18 | 63.7 | 2.4e-07 | 0.00032 | 19.7 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 1 | EF-hand_8 | 70 | 88 | 1.1e-14 | 53.7 | 0.0081 | 11.0 | 5.7 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 1 | EF-hand_5 | 71 | 93 | 1.2e-10 | 40.2 | 3.4e-05 | 0.046 | 13.0 |
| pfu_aug1.0_7354.1_09543.t1 | 2 | 1 | EF-hand_9 | 72 | 102 | 7.0e-06 | 25.8 | 0.0044 | 5.9 | 6.8 |
| pfu_aug1.0_7354.1_09543.t1 | 4 | 2 | EF-hand_1 | 114 | 130 | 2.8e-18 | 63.7 | 0.81 | 1100.0 | -0.7 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 2 | EF-hand_8 | 120 | 162 | 1.1e-14 | 53.7 | 0.00035 | 0.47 | 10.1 |
| pfu_aug1.0_7354.1_09543.t1 | 2 | 2 | EF-hand_7 | 144 | 204 | 4.3e-22 | 78.0 | 4.0e-17 | 5.5e-14 | 52.0 |
| pfu_aug1.0_7354.1_09543.t1 | 4 | 3 | EF-hand_1 | 144 | 171 | 2.8e-18 | 63.7 | 6.7e-08 | 9.0e-05 | 21.5 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 2 | EF-hand_6 | 144 | 172 | 1.5e-17 | 61.7 | 2.4e-08 | 3.2e-05 | 23.4 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 2 | EF-hand_5 | 145 | 159 | 1.2e-10 | 40.2 | 0.00016 | 0.21 | 10.9 |
| pfu_aug1.0_7354.1_09543.t1 | 2 | 2 | EF-hand_9 | 147 | 205 | 7.0e-06 | 25.8 | 4.4e-06 | 0.006 | 16.4 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 3 | EF-hand_8 | 156 | 205 | 1.1e-14 | 53.7 | 1.5e-14 | 2.0e-11 | 43.2 |
| pfu_aug1.0_7354.1_09543.t1 | 4 | 4 | EF-hand_1 | 179 | 206 | 2.8e-18 | 63.7 | 1.5e-09 | 2.0e-06 | 26.7 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 3 | EF-hand_6 | 180 | 205 | 1.5e-17 | 61.7 | 8.0e-06 | 0.011 | 15.5 |
| pfu_aug1.0_7354.1_09543.t1 | 3 | 3 | EF-hand_5 | 183 | 202 | 1.2e-10 | 40.2 | 5.2e-06 | 0.007 | 15.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7354.1_09543.t1 | gi|339236011|ref|XP_003379560.1| | calmodulin-1 [Trichinella spiralis] | 6.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7354.1_09543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7354.1_09543.t1 atggtatttgatgtggttatacgatacatgcgaagaaccattcaatttngatatgactttcatttgtcacgtcatctaga ctcttcagccgacctgatggaagtatcttatgcacagattcagaataaccttgacgaatatttgcatattttgtaaagcc ggagtctaccggcaaaagcagcatctgaagaagaaattgcagtgtacagggagttatttgactcctatgatgaggatagg gatggtgtgataacagtagtagagcttgaaacactcctggacaccctcggacaacatgacagaaagtcttatctgataaa aattataaaggatatggaacaaaaagatacagaaaaggttaacttcagtactttcgtagaatgcttatcaggaggtttga aaattggtcagaaggaatatgagatgatgatgagagaagctttcaaagtgtttgataaggacggcaaaggacacattaag acagacaaactgaagtcagcatttaaaagtctgggaaaacaaatgtcaaaggaggaagtagacgaaataatgagagaaat agattttaatcaagatgggaccattaattacgaagatatagcaagagcgatgaattcccattag |
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Protein
| Protein ID | pfu_aug1.0_7354.1_09543.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7354.1_09543.t1 MVFDVVIRYMRRTIQFXYDFHLSRHLDSSADLMEVSYAQIQNNLDEYLHILXSRSLPAKAASEEEIAVYRELFDSYDEDR DGVITVVELETLLDTLGQHDRKSYLIKIIKDMEQKDTEKVNFSTFVECLSGGLKIGQKEYEMMMREAFKVFDKDGKGHIK TDKLKSAFKSLGKQMSKEEVDEIMREIDFNQDGTINYEDIARAMNSH |
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