Gene
| Gene Model ID | pfu_aug1.0_7360.1_67680 |
|---|---|
| Locus | scaffold7360.1 : 55099 ... 59985 : - |
| To GenomeBrowser | scaffold7360.1:55099..59985 |
| Genes list of scaffold | scaffold7360.1 |
| Synonym | pfu_aug2.0_189.1_30389 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7360.1_67680.t1 | 2 | 1 | Patched | 9 | 284 | 0.0 | 320.5 | 4.3e-31 | 3.2e-27 | 94.8 |
| pfu_aug1.0_7360.1_67680.t1 | 4 | 1 | Sterol-sensing | 240 | 284 | 5.1e-15 | 55.2 | 1.8e-08 | 0.00013 | 21.4 |
| pfu_aug1.0_7360.1_67680.t1 | 2 | 2 | Patched | 285 | 718 | 0.0 | 320.5 | 0.0 | 0.0 | 231.4 |
| pfu_aug1.0_7360.1_67680.t1 | 4 | 2 | Sterol-sensing | 285 | 344 | 5.1e-15 | 55.2 | 5.8e-16 | 4.3e-12 | 45.7 |
| pfu_aug1.0_7360.1_67680.t1 | 4 | 3 | Sterol-sensing | 584 | 629 | 5.1e-15 | 55.2 | 0.25 | 1900.0 | -1.8 |
| pfu_aug1.0_7360.1_67680.t1 | 4 | 4 | Sterol-sensing | 615 | 700 | 5.1e-15 | 55.2 | 0.0027 | 20.0 | 4.6 |
Transcript
| Transcript ID | pfu_aug1.0_7360.1_67680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7360.1_67680.t1 atgctgaccataaagtcgatctccgactcggaaacactctatacgccgcaaaatagccaagcatccaaagacagaactac cttaaaaggcctgttctctgactacagcggaaacaatttctattcttacagtattacggacttcaactatttcggggagg tattgataaaaaccaagaacgatgtgaacattttgacgtcatcatttatgacggaaataaagagtattgacgcgcagata agggcggtcgttgcttccgattccggtgtatcgttcaattatagcgatgtttgtgctcttcgcgcaggcgcatgtgttgt ttccggagaggttgtgttgtcgacagcatttgaaacggcaatgctagctaacaacatcgattacccggtatttaacggcg aatccattgcaggtacattcggcggcttacagacttccggggggaagctgacgtcatcttatgtcgtaaaacttgtttat aatttacggacggatacggctgcctacgagagcaaatcgttggcgtgggagaaagcttttattacggcgatggagtcaat ttcttcggcaaatacagaacttgcttaccaatcgtccgactcggtaaactcggccttagatgagagcaccgccggagaca taaagtttttcagtgttacatttaccttaatgattacgtacgcttgctgtgctggaatagcagtcaatttgaattgtgta gcttggcgtgcaaatcttgcaatggcgggagtttttgcagcctgtcttgccattttatcatcttttggtttcatcagtct atgtaccgtggagtttgtcaacattgtaggggtgatgccttttcttataatagatttcctggcgtttgccatcggagcat cctctacctttatcagcgttcggaacttctgtctgtatacaggttttgccgtgtttttctgttatctgaaccagcttttc ttcttcgtaccatgtattgtcatcaacgagagacgagttgaggctaacaggcatttcatgtcttgtatgaaaacaagatc gaaagaggaactcacgaaagatggaaaaagtcgtggccatattttttgttgtgccggtgaacagccaaaagatcgaaatg attacgatagctacatggaaaaatatccaaaaatgctctttcaaaaaatcgtcaaacctctgccctgcaagataattatt ctcgtctgctttgctggttatctagccgcgtcgatatacggtgcagttaacctgaaacagggcttagaactgagaaatct cgcagcagacgactcttacttctacaaatacgacacatggaatagagattacatgccgagtcaggtccctatcagtttca ttataaaatcccgccagacatactccgcacagacgacacaggactcgatcagcgcgatgttgacagcagccaagcaggac gccgatattgatgacaatattgaaattaattggttgactgcgtttcaagccgatgcctcctacacgacaacctcggagtc cgcgtttgtttcagcgctggtgaccttcatccagtcaaacacaaagtatgagaacgacgtactttttgattctacaaaca cccacatagatgcttcgcggttctacgtgtttacagttgatctgaaagattcacaaaagcaagggaaaatgatgcaacgc atgcgcgatatagcaaacaacaatgccttgccagcttttccatttcacccctcctttattttcttcgagcagttcgtcac aattctctcggctacactgcagacgatcggaattgcagttgccgccatgacagttattacgataatatttatgccatatc ccgttctcgtaatttttgtgatggtaactatgatgatgattttgatcggcatttttggattcatgcattattgggacctt actcttagctcggttactatgattcaacttgtcatgactgttggattctcggtcgacttcagtgcgcatatctgtcatgg cttcatttccgtttccggtagctccaaagaagatcgggttcataaagcattggatcgaacaggaggggccgtaattaacg ctgctttttcatcaattttagatgtacatgtcatcgttcttcttgttcatttctcttgcatgtacatgtacttcccgact caaattggccgtttttttttgttcaagaacagggatgtcgtcagtcagatgtttgagtattcgaccttgaccatagggat gtcgtcagtaagatgtttgaatatttacctcgaccatagggatgtcgtcagtcagatgtttgagaacttgaccttgacca tagagatgtcgtcagtcagatgtttgagtattcgaccttga |
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Protein
| Protein ID | pfu_aug1.0_7360.1_67680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7360.1_67680.t1 MLTIKSISDSETLYTPQNSQASKDRTTLKGLFSDYSGNNFYSYSITDFNYFGEVLIKTKNDVNILTSSFMTEIKSIDAQI RAVVASDSGVSFNYSDVCALRAGACVVSGEVVLSTAFETAMLANNIDYPVFNGESIAGTFGGLQTSGGKLTSSYVVKLVY NLRTDTAAYESKSLAWEKAFITAMESISSANTELAYQSSDSVNSALDESTAGDIKFFSVTFTLMITYACCAGIAVNLNCV AWRANLAMAGVFAACLAILSSFGFISLCTVEFVNIVGVMPFLIIDFLAFAIGASSTFISVRNFCLYTGFAVFFCYLNQLF FFVPCIVINERRVEANRHFMSCMKTRSKEELTKDGKSRGHIFCCAGEQPKDRNDYDSYMEKYPKMLFQKIVKPLPCKIII LVCFAGYLAASIYGAVNLKQGLELRNLAADDSYFYKYDTWNRDYMPSQVPISFIIKSRQTYSAQTTQDSISAMLTAAKQD ADIDDNIEINWLTAFQADASYTTTSESAFVSALVTFIQSNTKYENDVLFDSTNTHIDASRFYVFTVDLKDSQKQGKMMQR MRDIANNNALPAFPFHPSFIFFEQFVTILSATLQTIGIAVAAMTVITIIFMPYPVLVIFVMVTMMMILIGIFGFMHYWDL TLSSVTMIQLVMTVGFSVDFSAHICHGFISVSGSSKEDRVHKALDRTGGAVINAAFSSILDVHVIVLLVHFSCMYMYFPT QIGRFFLFKNRDVVSQMFEYSTLTIGMSSVRCLNIYLDHRDVVSQMFENLTLTIEMSSVRCLSIRP |
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