Gene
| Gene Model ID | pfu_aug1.0_7369.1_52941 |
|---|---|
| Locus | scaffold7369.1 : 27254 ... 33685 : - |
| To GenomeBrowser | scaffold7369.1:27254..33685 |
| Genes list of scaffold | scaffold7369.1 |
| Synonym | pfu_aug2.0_220.1_00460 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-5-HT7-like |
| Description | Reciprocal BLASTP best hit to NCBI Accession AAQ84306.1, type 7 serotonin receptor (Planorbella trivolvis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7369.1_52941.t1 | 1 | 1 | 7tm_1 | 2 | 231 | 6.30024e-42 | 143.4 | 0.0 | 7.49975e-42 | 143.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7369.1_52941.t1 | gi|35187403|gb|AAQ84306.1| | type 7 serotonin receptor [Planorbella trivolvis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_7369.1_52941.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7369.1_52941.t1 atgaagcgcacgccgaagcgtatgggaatcatgatagcgatagtatgggttatgtccgtgttgatttctgtgccgccgtt gctcggatggagagatgataagatccagtatgagtgccacatcagtcaggaaatcgcataccagatctatgcaactttgt gtgccttctatataccgttaatggcgatgatttttgtgtattaccgaatatggaaggtatcggcccgactcgcgaaaaag acaagtgtatcgcaacccggaagcatcgatagaggaaatgatgtgttatttttaccttccacaaaatcgtcgagaagcag cgggcaaagcgatgcaagtactaatcacgcgaacggattcctcaaaaacggaaaccacgaagtgaatgacgccgaggatg cgccgcttgatatgctttcgcacaacaaaaatcataatacgcgcagacgttttacaataaaatcccttctgtctcgtagc aataataaatcagcagcgcacaaggacacccgagcgacccgaactttaggtttcattatgggaggatttattttatgttg gttaccgttctttattctggcggtagtgcgaccgatttgtgacttgaataactcgtgttccatcccaccacggctatttt ccttatttacgtggctagggtacacgaattcgttttggaatcctctgatttacgcacgtttcaacagagattttagaact cctttcaaagaaattatgtgcttacgttgtaaaggaattaataatagattgcgatcggttatatatgtagaacaatatgg acccgatcctacgtatcgggatagcctcaaaccgacaacagacacacatgtgcgttataatagtcaagggcaaaccgtcg tacacttaggtaatggaaatgtcaaacctgacgatgaaacgagggtatga |
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Protein
| Protein ID | pfu_aug1.0_7369.1_52941.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7369.1_52941.t1 MKRTPKRMGIMIAIVWVMSVLISVPPLLGWRDDKIQYECHISQEIAYQIYATLCAFYIPLMAMIFVYYRIWKVSARLAKK TSVSQPGSIDRGNDVLFLPSTKSSRSSGQSDASTNHANGFLKNGNHEVNDAEDAPLDMLSHNKNHNTRRRFTIKSLLSRS NNKSAAHKDTRATRTLGFIMGGFILCWLPFFILAVVRPICDLNNSCSIPPRLFSLFTWLGYTNSFWNPLIYARFNRDFRT PFKEIMCLRCKGINNRLRSVIYVEQYGPDPTYRDSLKPTTDTHVRYNSQGQTVVHLGNGNVKPDDETRV |
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