Gene
| Gene Model ID | pfu_aug1.0_7375.1_09549 |
|---|---|
| Locus | scaffold7375.1 : 17316 ... 22677 : + |
| To GenomeBrowser | scaffold7375.1:17316..22677 |
| Genes list of scaffold | scaffold7375.1 |
| Synonym | pfu_aug2.0_22124.1_16642 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7375.1_09549.t1 | 2 | 1 | DUF4639 | 7 | 144 | 2.2e-34 | 119.0 | 9.8e-37 | 1.4e-32 | 113.0 |
| pfu_aug1.0_7375.1_09549.t1 | 2 | 2 | DUF4639 | 136 | 207 | 2.2e-34 | 119.0 | 7.7e-05 | 1.1 | 7.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7375.1_09549.t1 | gi|198431699|ref|XP_002127516.1| | PREDICTED: uncharacterized protein C2orf81 homolog isoform X1 [Ciona intestinalis] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
| pearlSac | 4 |
Transcript
| Transcript ID | pfu_aug1.0_7375.1_09549.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7375.1_09549.t1 atgcttgataaagattcgtcagaagatgttgttgataagattatggaggatttggttgacacaaccatggacaacatcta caagctttacacagaaaggcaactgttaccattcacagtcagtcaagccaaagatgccatacttagcattgtagagtggc agtttttatcaagagatgaaggtgaggtggaaatcgacaacgatcaaagttggatggaggatgaagagccagaaccagcc ttcaccgactgttgggcccagggatctgtacccaaacagctgataccaccacgccctatctctcctgtcgctgaggtttt cttggaacatcctgatgataaagatgaggatattgttccaggaccagaaagggaggagactaaagaggaggaggctgaga aggaggatgaggttacagaggaggtacctgttatcaaagaggagtcagatgtcaaagtagaggaaaagaaggttcagtct ggccgtcctcctggtaataaggatgtcctctatgatgacatggggaatgttatggctgttgtcaaactcaatcctgataa actgccttctcacagagttaaagtgaactaccagatagttgacccttcagttgaagctgcccaagccaggctggatgcaa tgagacatggaaaatttacacgcttgtacctgaaaaagaaaaaacctgccatagaggaatttgatgaagctacagataga ggctatggagctggcaccaggagttacagttaa |
|
Protein
| Protein ID | pfu_aug1.0_7375.1_09549.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7375.1_09549.t1 MLDKDSSEDVVDKIMEDLVDTTMDNIYKLYTERQLLPFTVSQAKDAILSIVEWQFLSRDEGEVEIDNDQSWMEDEEPEPA FTDCWAQGSVPKQLIPPRPISPVAEVFLEHPDDKDEDIVPGPEREETKEEEAEKEDEVTEEVPVIKEESDVKVEEKKVQS GRPPGNKDVLYDDMGNVMAVVKLNPDKLPSHRVKVNYQIVDPSVEAAQARLDAMRHGKFTRLYLKKKKPAIEEFDEATDR GYGAGTRSYS |
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