Gene
| Gene Model ID | pfu_aug1.0_742.1_58230 |
|---|---|
| Locus | scaffold742.1 : 1 ... 12015 : + |
| To GenomeBrowser | scaffold742.1:1..12015 |
| Genes list of scaffold | scaffold742.1 |
| Synonym | pfu_aug2.0_1506.1_21654 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_742.1_58230.t1 | 1 | 1 | MMR_HSR1 | 1 | 113 | 1.1e-13 | 51.1 | 3.7e-17 | 1.8e-13 | 50.4 |
| pfu_aug1.0_742.1_58230.t1 | 1 | 1 | MMR_HSR1_C | 211 | 288 | 1.1e-15 | 57.7 | 4.0e-19 | 2.0e-15 | 56.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_742.1_58230.t1 | gi|260831075|ref|XP_002610485.1| | hypothetical protein BRAFLDRAFT_85626 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_742.1_58230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_742.1_58230.t1 gggaagcctagtgctggtaagtcgactttcttcaatgctgcaacaacacttgacttggccagaactggagctcatccttt caccaccatagaacctaatataggcaaggctttctactctataccgtgtccgtgtcgtaggttaacgggaacgtgcaatg cagctaatggtcacaactatgctggagatagaaacattcctgtattgttgaaggatgttgctggtcttgtacctggggca tgggagggtaaaggtaagggaaatagattccttaacgacctgctagatgcagatgtactgattcacattgttgactcgtc agggcagaccaacgagaagggggagataactacagattatgatccagcatcagatatacaatggctacaacaagaactac atcaatggatataccagaatgtattcagtaaatgggataacataatcaagcgcccacatagacttgttgatatgtttact ggttaccatgccaacatagctaccatactcacagcttttcacaatgcagggataaatgaaagagagctatcatgtatttc aacttggaatgagtcagtattacatagaatagtagatcacttcctacaagtcaggtttcctataatgctggtactgaata aagcagacactgagacgtcagtaaaaatcattgataggctgtccacggtccatgacaatgtgatacctgtgagtgcccag ggtgagtgttacttacaaaagctgaccaaggacggtgctatacaatatacctcagggcagtcagactttgatattgtgtc agatttgaaattggatgatgccatcagagaaaagttagactttttagagaggacggttttcaaaaggtaa |
|
Protein
| Protein ID | pfu_aug1.0_742.1_58230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_742.1_58230.t1 GKPSAGKSTFFNAATTLDLARTGAHPFTTIEPNIGKAFYSIPCPCRRLTGTCNAANGHNYAGDRNIPVLLKDVAGLVPGA WEGKGKGNRFLNDLLDADVLIHIVDSSGQTNEKGEITTDYDPASDIQWLQQELHQWIYQNVFSKWDNIIKRPHRLVDMFT GYHANIATILTAFHNAGINERELSCISTWNESVLHRIVDHFLQVRFPIMLVLNKADTETSVKIIDRLSTVHDNVIPVSAQ GECYLQKLTKDGAIQYTSGQSDFDIVSDLKLDDAIREKLDFLERTVFKR |
|