Gene
Gene Model ID | pfu_aug1.0_7438.1_02444 |
---|---|
Locus | scaffold7438.1 : 7426 ... 17364 : + |
To GenomeBrowser | scaffold7438.1:7426..17364 |
Genes list of scaffold | scaffold7438.1 |
Synonym | pfu_aug2.0_550.1_00875 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7438.1_02444.t1 | 1 | 1 | Tmemb_cc2 | 30 | 316 | 0.0 | 283.4 | 0.0 | 0.0 | 283.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7438.1_02444.t1 | gi|156120499|ref|NP_001095395.1| | transmembrane and coiled-coil domains protein 1 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_7438.1_02444.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7438.1_02444.t1 atgaaccgaatcgaaattaaccgaatcgaggccttgcgaatcgaaaccgaactgaatcgaaggatacctgaatgaggtgt tgttgataaagccaagggtgccaaagattccatagtgtcaaagcctaaagaatttgctcatcttataaagaacaagtttg gtagtgctgataacatcacccagatgaaagtgacagaagaaggggcatcaacagaaggggagaaaactcctcatggcagt acccttccagctagttttaaatacccttcagaggatgatgcttccagtataacatcagagtcaggagtaggtcagcaaag ttcacctccctcactctcccacaatgcatcacaaaatttacccatgagtccccagatacagcttgagccaatcatgcatg agcttgaagaattcaaagaagcacatagaagactggaagatctcacaaagcaaattcttgaagaatttcaagatttcaag gtcaagacgcagagtgagaccagtttactccaaagactattggatgaagagagatacagaacggaacgactggaggagca gatcaacgacatgtcagagttacatcaaaatgagatgaccaacttaagacaggatatatccagcatggaagaaaagatag agtacagactagatgagcgcacaacagatatccatgaaatgctagaaaattgccaaacacgggttaccaagatggaactt cagcaacaacagcagcagatcatctccatggaaatggtagataacgtgacctttcgaactttgttgacaaaactcctcaa tgttgtcctggctatacttgctgtgatattagtattcgtatcgacggctgccaacttggtagcaccgtttttaactacaa gggcacgtatcctgagtacaattgtactaattgtaagtgtggttgtgattggaaggaactatgatgtcatatttggattt atagccggagtctataattacttcgccggatttctcccagcaagttga |
Protein
Protein ID | pfu_aug1.0_7438.1_02444.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7438.1_02444.t1 MNRIEINRIEALRIETELNRRIPEXGVVDKAKGAKDSIVSKPKEFAHLIKNKFGSADNITQMKVTEEGASTEGEKTPHGS TLPASFKYPSEDDASSITSESGVGQQSSPPSLSHNASQNLPMSPQIQLEPIMHELEEFKEAHRRLEDLTKQILEEFQDFK VKTQSETSLLQRLLDEERYRTERLEEQINDMSELHQNEMTNLRQDISSMEEKIEYRLDERTTDIHEMLENCQTRVTKMEL QQQQQQIISMEMVDNVTFRTLLTKLLNVVLAILAVILVFVSTAANLVAPFLTTRARILSTIVLIVSVVVIGRNYDVIFGF IAGVYNYFAGFLPAS |