Gene
| Gene Model ID | pfu_aug1.0_7438.1_02444 |
|---|---|
| Locus | scaffold7438.1 : 7426 ... 17364 : + |
| To GenomeBrowser | scaffold7438.1:7426..17364 |
| Genes list of scaffold | scaffold7438.1 |
| Synonym | pfu_aug2.0_550.1_00875 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7438.1_02444.t1 | 1 | 1 | Tmemb_cc2 | 30 | 316 | 0.0 | 283.4 | 0.0 | 0.0 | 283.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7438.1_02444.t1 | gi|156120499|ref|NP_001095395.1| | transmembrane and coiled-coil domains protein 1 [Bos taurus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7438.1_02444.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7438.1_02444.t1 atgaaccgaatcgaaattaaccgaatcgaggccttgcgaatcgaaaccgaactgaatcgaaggatacctgaatgaggtgt tgttgataaagccaagggtgccaaagattccatagtgtcaaagcctaaagaatttgctcatcttataaagaacaagtttg gtagtgctgataacatcacccagatgaaagtgacagaagaaggggcatcaacagaaggggagaaaactcctcatggcagt acccttccagctagttttaaatacccttcagaggatgatgcttccagtataacatcagagtcaggagtaggtcagcaaag ttcacctccctcactctcccacaatgcatcacaaaatttacccatgagtccccagatacagcttgagccaatcatgcatg agcttgaagaattcaaagaagcacatagaagactggaagatctcacaaagcaaattcttgaagaatttcaagatttcaag gtcaagacgcagagtgagaccagtttactccaaagactattggatgaagagagatacagaacggaacgactggaggagca gatcaacgacatgtcagagttacatcaaaatgagatgaccaacttaagacaggatatatccagcatggaagaaaagatag agtacagactagatgagcgcacaacagatatccatgaaatgctagaaaattgccaaacacgggttaccaagatggaactt cagcaacaacagcagcagatcatctccatggaaatggtagataacgtgacctttcgaactttgttgacaaaactcctcaa tgttgtcctggctatacttgctgtgatattagtattcgtatcgacggctgccaacttggtagcaccgtttttaactacaa gggcacgtatcctgagtacaattgtactaattgtaagtgtggttgtgattggaaggaactatgatgtcatatttggattt atagccggagtctataattacttcgccggatttctcccagcaagttga |
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Protein
| Protein ID | pfu_aug1.0_7438.1_02444.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7438.1_02444.t1 MNRIEINRIEALRIETELNRRIPEXGVVDKAKGAKDSIVSKPKEFAHLIKNKFGSADNITQMKVTEEGASTEGEKTPHGS TLPASFKYPSEDDASSITSESGVGQQSSPPSLSHNASQNLPMSPQIQLEPIMHELEEFKEAHRRLEDLTKQILEEFQDFK VKTQSETSLLQRLLDEERYRTERLEEQINDMSELHQNEMTNLRQDISSMEEKIEYRLDERTTDIHEMLENCQTRVTKMEL QQQQQQIISMEMVDNVTFRTLLTKLLNVVLAILAVILVFVSTAANLVAPFLTTRARILSTIVLIVSVVVIGRNYDVIFGF IAGVYNYFAGFLPAS |
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