Gene
| Gene Model ID | pfu_aug1.0_7452.1_60248 |
|---|---|
| Locus | scaffold7452.1 : 6796 ... 30185 : + |
| To GenomeBrowser | scaffold7452.1:6796..30185 |
| Genes list of scaffold | scaffold7452.1 |
| Synonym | pfu_aug2.0_28.1_26698 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | twitchin |
| Description | Twitchin partial sequence. BLASTP top hit to AB062881 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7452.1_60248.t1 | 4 | 1 | V-set | 20 | 41 | 1.0e-10 | 41.4 | 0.15 | 320.0 | 1.2 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 1 | Ig_2 | 21 | 47 | 1.0e-15 | 57.5 | 0.1 | 210.0 | 2.1 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 1 | I-set | 22 | 47 | 0.0 | 166.1 | 1.0e-05 | 0.022 | 14.6 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 2 | Ig_2 | 63 | 152 | 1.0e-15 | 57.5 | 8.2e-08 | 0.00017 | 21.6 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 2 | V-set | 67 | 143 | 1.0e-10 | 41.4 | 1.6e-06 | 0.0034 | 17.2 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 2 | I-set | 68 | 153 | 0.0 | 166.1 | 7.5e-15 | 1.6e-11 | 43.9 |
| pfu_aug1.0_7452.1_60248.t1 | 3 | 1 | ig | 75 | 136 | 2.7e-10 | 40.1 | 5.9e-06 | 0.012 | 15.6 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 3 | Ig_2 | 163 | 254 | 1.0e-15 | 57.5 | 5.6e-06 | 0.012 | 15.7 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 3 | I-set | 184 | 254 | 0.0 | 166.1 | 6.4e-10 | 1.4e-06 | 28.0 |
| pfu_aug1.0_7452.1_60248.t1 | 3 | 2 | ig | 196 | 240 | 2.7e-10 | 40.1 | 0.15 | 330.0 | 1.5 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 3 | V-set | 224 | 254 | 1.0e-10 | 41.4 | 0.0014 | 3.0 | 7.7 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 4 | I-set | 268 | 357 | 0.0 | 166.1 | 2.3e-24 | 4.8e-21 | 74.4 |
| pfu_aug1.0_7452.1_60248.t1 | 3 | 3 | ig | 287 | 339 | 2.7e-10 | 40.1 | 1.3e-06 | 0.0027 | 17.8 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 4 | Ig_2 | 291 | 345 | 1.0e-15 | 57.5 | 7.3e-05 | 0.15 | 12.1 |
| pfu_aug1.0_7452.1_60248.t1 | 4 | 4 | V-set | 293 | 345 | 1.0e-10 | 41.4 | 0.00036 | 0.77 | 9.6 |
Transcript
| Transcript ID | pfu_aug1.0_7452.1_60248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7452.1_60248.t1 atgagcatttcttctgatactcaggctcagtgggatttcaaaaaaaagagaaaaaatgaccccaaggcagatgacggagg agtttacaaagtcacagcgaccaatgagcttggagaatccaatgccaccattacactcaacttccaaagtctccaggaac agaaacccaaacctacaggaacaccaccaaccttcaaagagaaacccaaggtcaaccaggagggtaacaaccttattata gagtgcgcatgtactgccagccctaagccgaccttgacctggtatagggagaacaaggtcatcttaccaggacccaggta taagatgaggacccaggagaagggcaaggacgaatatatgatcttcatggatatcattggcttcacaaaaggtgacagtg gtcaatataaagtagtagccaagaacgagatgggagagggaaatgccaatatcactattaacttagaagggccaaaagag gaggcccccagattacagggcttacctaacgtacgcctcgaggacggagggaagaagctggtatgtgatcagacagtact gtgtaagaccaaacctacggccatgtggtacttcgggaacaagccaatcaaaagtggcggaagatacaacctggttatta aacctgtcaatgatggataccttataggaatggaaatcaaggacccagtagatgctgattcaggggaatacaaatgtgtc atcaagaatcctggtggtgaagtcaccactacatcaaagatcaaccttaaagctttacaaccaaagatccaaggagaagg tccaaagttcacacagaaattagcaccaaagacggccctggacggtgatgccgtggactttatagccaaaataactggca ctgaaccggtgaccgtcacttggcagaaagataaaaagccagtcaaggaaggggacgcgtacaagatgacgtatgacaag ggcacctgtaggttatatatagctgaggtcttcccagaggatgccggagaataccgtgtagatgttaaaaaccagtttgg atctgctttctgttctgcaactttaggtgtaaaagacaatccaaagcttcaacaacagaaagaggcagaggaaaagaaac tagaggctaaaaaggaacctgagaagaaaaaggagccggagccagccaagaaagaaccagaaccccagaaagatgagtct agcagagaaagtggtgattccgaagatggatacgaggctgacgacgataagcctaatatacccataatccttacaaatca tgactcagagcctgttaaggatggagattatgaaacacaaggacccaaaaaggtgggagttagtaaaaccaaacccccac ccaaaaccaaaatagagggccccacccataccattgccaaaaagccagacaaccaagttattgttgaagatccaaaagac tctgaacttgattttagatctctacttaaacatagagatcataaaaagaatgaagcagaggatgatgatattgactgggg atcacttaagcctgctcgccgggacgaatgtccggagagctattgtcatacccccggtgtcggcgtctgcgttggcattg gcgtctgtgtcggcgtgcgcgtgcacaaaaactttaaccttgcttataacttttaa |
|
Protein
| Protein ID | pfu_aug1.0_7452.1_60248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7452.1_60248.t1 MSISSDTQAQWDFKKKRKNDPKADDGGVYKVTATNELGESNATITLNFQSLQEQKPKPTGTPPTFKEKPKVNQEGNNLII ECACTASPKPTLTWYRENKVILPGPRYKMRTQEKGKDEYMIFMDIIGFTKGDSGQYKVVAKNEMGEGNANITINLEGPKE EAPRLQGLPNVRLEDGGKKLVCDQTVLCKTKPTAMWYFGNKPIKSGGRYNLVIKPVNDGYLIGMEIKDPVDADSGEYKCV IKNPGGEVTTTSKINLKALQPKIQGEGPKFTQKLAPKTALDGDAVDFIAKITGTEPVTVTWQKDKKPVKEGDAYKMTYDK GTCRLYIAEVFPEDAGEYRVDVKNQFGSAFCSATLGVKDNPKLQQQKEAEEKKLEAKKEPEKKKEPEPAKKEPEPQKDES SRESGDSEDGYEADDDKPNIPIILTNHDSEPVKDGDYETQGPKKVGVSKTKPPPKTKIEGPTHTIAKKPDNQVIVEDPKD SELDFRSLLKHRDHKKNEAEDDDIDWGSLKPARRDECPESYCHTPGVGVCVGIGVCVGVRVHKNFNLAYNF |
|