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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7452.1_60249
Locus scaffold7452.1 : 32436 ... 56108 : +
To GenomeBrowser scaffold7452.1:32436..56108
Genes list of scaffold scaffold7452.1
Synonym pfu_aug2.0_28.1_26693

Manual annotation
Study fieldstructural proteins
Gene nametwitchin
DescriptionTwitchin partial sequence. BLASTP top hit to AB062881 (Mytius galloprovincialis).
mRNA evidence

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7452.1_60249.t1 9 1 I-set 23 75 0.0 344.0 3.5e-08 3.5e-05 23.5
pfu_aug1.0_7452.1_60249.t1 9 1 Y_Y_Y 34 66 2.8e-15 55.8 0.3 290.0 1.2
pfu_aug1.0_7452.1_60249.t1 6 1 V-set 35 66 6.9e-15 54.9 0.0016 1.5 8.6
pfu_aug1.0_7452.1_60249.t1 5 1 Ig_3 35 62 5.1e-12 46.1 0.075 74.0 3.9
pfu_aug1.0_7452.1_60249.t1 7 1 Ig_2 37 75 1.0e-34 118.4 0.08 79.0 3.4
pfu_aug1.0_7452.1_60249.t1 4 1 DUF11 52 73 4.5e-06 26.6 0.00095 0.94 9.5
pfu_aug1.0_7452.1_60249.t1 11 1 fn3 82 153 0.0 592.9 4.5e-08 4.5e-05 23.5
pfu_aug1.0_7452.1_60249.t1 9 2 I-set 94 152 0.0 344.0 0.0077 7.6 6.4
pfu_aug1.0_7452.1_60249.t1 6 1 Tissue_fac 117 151 1.1e-09 38.0 0.11 110.0 2.6
pfu_aug1.0_7452.1_60249.t1 11 2 fn3 169 253 0.0 592.9 2.5e-18 2.4e-15 56.3
pfu_aug1.0_7452.1_60249.t1 11 3 fn3 270 353 0.0 592.9 2.5e-22 2.5e-19 69.1
pfu_aug1.0_7452.1_60249.t1 6 2 Tissue_fac 286 345 1.1e-09 38.0 0.37 370.0 0.9
pfu_aug1.0_7452.1_60249.t1 7 2 Ig_2 287 357 1.0e-34 118.4 0.99 980.0 -0.1
pfu_aug1.0_7452.1_60249.t1 9 2 Y_Y_Y 307 354 2.8e-15 55.8 0.00025 0.24 11.1
pfu_aug1.0_7452.1_60249.t1 9 3 I-set 322 348 0.0 344.0 0.16 160.0 2.2
pfu_aug1.0_7452.1_60249.t1 7 3 Ig_2 367 458 1.0e-34 118.4 4.0e-06 0.0039 17.2
pfu_aug1.0_7452.1_60249.t1 5 2 Ig_3 367 422 5.1e-12 46.1 0.12 120.0 3.2
pfu_aug1.0_7452.1_60249.t1 9 4 I-set 375 458 0.0 344.0 3.7e-15 3.6e-12 45.9
pfu_aug1.0_7452.1_60249.t1 4 1 C2-set_2 394 409 1.9e-08 34.0 0.61 600.0 0.4
pfu_aug1.0_7452.1_60249.t1 6 2 V-set 413 449 6.9e-15 54.9 0.41 400.0 0.9
pfu_aug1.0_7452.1_60249.t1 4 2 DUF11 428 454 4.5e-06 26.6 0.044 44.0 4.2
pfu_aug1.0_7452.1_60249.t1 11 4 fn3 464 546 0.0 592.9 8.5e-19 8.4e-16 57.8
pfu_aug1.0_7452.1_60249.t1 6 3 Tissue_fac 480 545 1.1e-09 38.0 0.0026 2.6 7.8
pfu_aug1.0_7452.1_60249.t1 9 3 Y_Y_Y 506 549 2.8e-15 55.8 0.00023 0.22 11.2
pfu_aug1.0_7452.1_60249.t1 11 5 fn3 565 649 0.0 592.9 2.7e-21 2.7e-18 65.8
pfu_aug1.0_7452.1_60249.t1 9 4 Y_Y_Y 603 650 2.8e-15 55.8 0.0035 3.4 7.4
pfu_aug1.0_7452.1_60249.t1 9 5 I-set 672 755 0.0 344.0 1.6e-15 1.6e-12 47.0
pfu_aug1.0_7452.1_60249.t1 7 4 Ig_2 688 755 1.0e-34 118.4 7.6e-07 0.00076 19.5
pfu_aug1.0_7452.1_60249.t1 6 3 V-set 700 744 6.9e-15 54.9 0.0027 2.7 7.9
pfu_aug1.0_7452.1_60249.t1 4 3 DUF11 727 763 4.5e-06 26.6 0.032 31.0 4.6
pfu_aug1.0_7452.1_60249.t1 11 6 fn3 764 843 0.0 592.9 1.3e-17 1.2e-14 54.1
pfu_aug1.0_7452.1_60249.t1 6 4 Tissue_fac 777 843 1.1e-09 38.0 0.022 21.0 4.8
pfu_aug1.0_7452.1_60249.t1 9 5 Y_Y_Y 817 844 2.8e-15 55.8 0.71 700.0 0.0
pfu_aug1.0_7452.1_60249.t1 11 7 fn3 862 946 0.0 592.9 4.5e-22 4.5e-19 68.3
pfu_aug1.0_7452.1_60249.t1 6 5 Tissue_fac 873 937 1.1e-09 38.0 0.012 12.0 5.6
pfu_aug1.0_7452.1_60249.t1 9 6 Y_Y_Y 929 941 2.8e-15 55.8 0.27 260.0 1.4
pfu_aug1.0_7452.1_60249.t1 11 8 fn3 962 1047 0.0 592.9 6.4e-18 6.3e-15 55.0
pfu_aug1.0_7452.1_60249.t1 9 7 Y_Y_Y 1005 1055 2.8e-15 55.8 0.011 11.0 5.9
pfu_aug1.0_7452.1_60249.t1 9 6 I-set 1064 1153 0.0 344.0 1.6e-20 1.6e-17 63.1
pfu_aug1.0_7452.1_60249.t1 5 3 Ig_3 1070 1140 5.1e-12 46.1 0.0011 1.1 9.7
pfu_aug1.0_7452.1_60249.t1 6 4 V-set 1072 1141 6.9e-15 54.9 0.0016 1.6 8.6
pfu_aug1.0_7452.1_60249.t1 7 5 Ig_2 1078 1152 1.0e-34 118.4 2.8e-08 2.8e-05 24.1
pfu_aug1.0_7452.1_60249.t1 4 2 C2-set_2 1089 1144 1.9e-08 34.0 0.0007 0.7 9.8
pfu_aug1.0_7452.1_60249.t1 4 4 DUF11 1145 1185 4.5e-06 26.6 0.72 720.0 0.3
pfu_aug1.0_7452.1_60249.t1 9 7 I-set 1157 1220 0.0 344.0 8.9e-09 8.8e-06 25.4
pfu_aug1.0_7452.1_60249.t1 11 9 fn3 1223 1305 0.0 592.9 6.9e-15 6.8e-12 45.3
pfu_aug1.0_7452.1_60249.t1 6 6 Tissue_fac 1239 1304 1.1e-09 38.0 0.14 140.0 2.2
pfu_aug1.0_7452.1_60249.t1 9 8 Y_Y_Y 1290 1310 2.8e-15 55.8 0.45 440.0 0.7
pfu_aug1.0_7452.1_60249.t1 11 10 fn3 1322 1407 0.0 592.9 1.8e-17 1.8e-14 53.6
pfu_aug1.0_7452.1_60249.t1 9 8 I-set 1424 1513 0.0 344.0 4.9e-23 4.9e-20 71.1
pfu_aug1.0_7452.1_60249.t1 6 5 V-set 1432 1483 6.9e-15 54.9 3.0e-05 0.029 14.2
pfu_aug1.0_7452.1_60249.t1 7 6 Ig_2 1434 1508 1.0e-34 118.4 1.9e-07 0.00019 21.4
pfu_aug1.0_7452.1_60249.t1 5 4 Ig_3 1434 1500 5.1e-12 46.1 7.1e-05 0.07 13.6
pfu_aug1.0_7452.1_60249.t1 4 3 C2-set_2 1436 1464 1.9e-08 34.0 0.00081 0.8 9.6
pfu_aug1.0_7452.1_60249.t1 7 7 Ig_2 1529 1608 1.0e-34 118.4 1.0e-06 0.001 19.1
pfu_aug1.0_7452.1_60249.t1 9 9 I-set 1530 1608 0.0 344.0 4.6e-17 4.5e-14 52.0
pfu_aug1.0_7452.1_60249.t1 5 5 Ig_3 1537 1592 5.1e-12 46.1 0.098 97.0 3.5
pfu_aug1.0_7452.1_60249.t1 4 4 C2-set_2 1544 1577 1.9e-08 34.0 0.0057 5.6 6.9
pfu_aug1.0_7452.1_60249.t1 6 6 V-set 1556 1596 6.9e-15 54.9 0.054 54.0 3.7
pfu_aug1.0_7452.1_60249.t1 11 11 fn3 1613 1694 0.0 592.9 2.7e-16 2.7e-13 49.8
pfu_aug1.0_7452.1_60249.t1 9 9 Y_Y_Y 1656 1697 2.8e-15 55.8 0.21 210.0 1.7
pfu_aug1.0_7452.1_60249.t1 1 1 Pkinase 1716 1834 3.7e-21 75.4 6.4e-24 6.3e-21 74.6
pfu_aug1.0_7452.1_60249.t1 1 1 Pkinase_Tyr 1719 1802 3.9e-06 26.1 6.5e-09 6.5e-06 25.4

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
>Adult tissues
adductorMuscle 2
mantle 1

Transcript
Transcript IDpfu_aug1.0_7452.1_60249.t1
Definition-
>pfu_aug1.0_7452.1_60249.t1
atggatgtattacaaacatcgtcacctatgctttcaaaattacatataaatcatgagggtaagctagaggatattcaatc
tggtgacggcataaagatcgacaatagtacaccaaagaaatcctccctcacctacagtaaccctgccagaaaggacaccg
gagaatataccgtcactgtcaccaataaacatggtgacgatagtgccgatatagaggtggtggtactaggtcctccatct
agacctgaaggtccactgaaggtcagtaatgtcaaacaagaccagatgaccttgaactggaaggaacctacagacactgg
tggaacacctatagaaaataataaaattgtctgttctaattctaaaggatgtgagtttacagacagcaaagtaacggatg
gcaaagaatatcagtaccgcgtaacggcaaataatgaggctggagagtcagaaccaagtctaccatcctctgccatagtg
gctaaaccaagtaaagatactcctgatgctccaagagatgttaccattcctaagtacgacaagaactctgcagaaatcca
ctggaaagaaccaaacagtgacggtggtaatccaatcaaaggctatattgttgagaagaaacccaagtctggagaatggg
tgccgtgtaataacttccctgttaaggataccaacttcaccgttatgggactgaaagaaggtcaagtccttgagttcagg
gtcaaggccgtcaatgatggtggtgagggcaaacccagcaaagcaactgaacctcataaagtcagagaccaagtcttccc
tgctggagcaccaaaccagcctaatgttgataagatcaccaaggattccgtcggcctgtcatggcagaaaccaaccaatg
acggtggtggtaaactgaagggttatatcatagagaagaaaaagaaggatggagactgggaggaggctaaggaagtacca
gccaccgagaactcctgtacgatccctaacctgaaggagggtgatgagtatcagttccgtgtgaaggcagtcaatgctgc
cggaccaggcgagccaagcaggcccactaaagcagtagttgttgaggaacagccagctaaacctgtcttaaacatgtctg
gagtgaaggacgtcacagtgaaggcaggtcagaacttccagattagtataccttatactggcttccctaaaccaacagca
acctggattaacggggacgaagaaatcaaagattctcctagagtcgctctcaaggtactggatgaccaaattgtgttggc
caatagtaaggctgaaagaggtgactcgggtaaatacaaggtgaccttgaagaatgattctggacaggaatcaggaactc
tcaatgttaacgttctagacaagccagctgcacctgaaggtcctctgaccgccactgacatcataggagaggagctcacc
cttaactggaaagcaccaaaagatgacggaggtgagaaaatcaacaactacatagtggagaaacgcaaggcaggatcaaa
acaatggcagaaagtttccagctttatcaacagtccatcatgtaacgtcaggaacttggaaccaggaaccgagtatgagt
tccgtgtaatggctgagaacatgcagggagttagtgaaccgctcgaaacatcaacaccaatactggccaaactaccttat
gacactcctggagctcctggtaaaccagagtgtatagagttcactgaggattcggcaacaatcacctgggatacgccaag
gaaagatggtggaaatcccatcaaaggttacgttgtggagaaaaaagagaaaggagacaacagatggacaaaggctaata
tctctgatgtacttggtaatgaatatacagtgaagggattaacagagggcaaagagtatgaattccgagtggcagctata
aataacgcaggtgtcggagattacagtcagtgctctgaggcaatcaaggctagaccagctccagtggcgccaaaagttaa
cagagatttcttccccaaagacatcacagtcaaaaaaggagaagaatttaagatagccattccatacactggtaacccaa
taccatctacaaaatgggaacagggcaccaagcctgttgatgagggtggtcgtataaaattcgagaacactccaacggaa
cttaaactgatcaacaagaaggcagaattaggtgatgctggacgctacacactcactatggaaaatgagaagggcaaaga
tacatgtagtattaatgtcaaggtcgttgatgccccagcttcccctgagggtccattagaagtcagtaatgtcacacctg
attcctgtgtactcaactggaaagctccaaaggaggatggaggtagtccagtctctaactatgttgttgagaagaaagac
gcaaggacaggtaaatgggaaccagtcagtaagtttgtacgcggtaccaacttcgaagtgatgggactagaggagggaca
tgagtacatgttccgagtatctgctgagaacgagcatggagtgagcgaaccactagagacagccttaggaactgtggctc
aacatccatacactgctcccggagcaccaagtaacccccatgttgtggatgtggacgagggctccgtcactttatcctgg
aataaacctaaagatgacggaggcaagaagatccaaggttacgtagtagagtacaaagacccaactagcggcagatggaa
acctcacagtgatatacctgtcaatgatactgtcgctacagttgatggtttgaagaaggacaaggagtatgaattccgtg
tacgtgcgaagaacatggccggcctgggagagcccagtggtgttgtcggacctgtcacaccaaaacctaaatacactaag
gccagtcctcctggtacaccagaggtggctgatatcggtaaaacattcgtagatctcaagtgggataaaccaaagaatga
tggcggagctaaaatcactggttatgtagtagagaagaggcccaagggtgctgataattgggttaaggccacagactatc
cttgtatagatcctaactatacagtaacaggattacccgaggggtcggagtgggagttcagggtcacagctgttaacgcc
gcaggcaacagtgaacccagcctggctacggctccaatcaaaataaaggagaaaatcgttggatctgcaccagaattcat
taagaaaccgtttaacatgacggcagctctaggaggtgaagttcattttgttgctcaagtccatggtaaacctttacctg
atgtacaatggtacagacatggtgtaccagtaggtagtggaggtaggattaagatgaagcaggatgacgatgtattcaca
ctctacataaacgagacgtacgataaagacgcaggagaattcacgtgtgaaatcagtaatccactcggcagggataaagc
ttcatgtacactcacaatcctggctccaccaaagatagagaaggagatcaaagatcaacaggttcaggtcggagaagtgc
tcaaactgaaaataccagtcagtggaactggaccattcgaggtcaaggtcaagaaggataaccgtgaccttcctgagagt
gataggttcaaggtcactccatttgatgactatgttgtattgaatctcaaaggtgctccatctaaacccactggaccatt
gaatgttggtgacatcactaagagtggttgtaagttgtcatggaaaccacccagggagacaggtggcgctaaaatccaga
actatatcatagagagacaggaagtgggcaaaccatactgggtcactgtgtcttcacattgcaaggactgcaatcaagat
gtacagggacttgccgaggatcaccagtacaagttccgtgtatcggcagttaacgaacacggccaatcagaacccctgga
ggctgagagtcctatcacagccaaaatgccatttgacaagccggatgcccctggtattcccagtgttacagaagtgggcg
gagactttgtcagtctacaatgggataaaccaagatcagatggagggggccgtatcactggctactggatagataaacgt
gaacatggcacagataactggaacagagtcaacttgcagccatgtatcactaacatgatcaatataccaaacctggtgga
ggacaagcagtacgagttcagagtgttcgctgaaaatgaggctggacttagtaaaccttccatggcttctaacagtgtca
aggtcaaagatcctaatgctgctgttattcctgaattctctgttggtatgaagaagatgacagtagaacaaggaaagaac
gccagatttgagtgtgaagtcacaggaacaccaaaaccagaagtacaatggtacaaaggaacccgtgagttatttgacga
caggaagtttgagattctggaggaaggtgacaaacacatccttattatacatgatgttttcggggaggatcaagatgagt
actccgtcaaagccttcaataggggcggatccagagtctccagggcagaattaattatcaaatctcctcccaagattcac
cttccaaacagattcaaagaagtcagcacgttcgagaaaggtgaaccagttgttatcaaaataccatttaccggaaatcc
caaaccgtcagttaaatggctgagagagggagaggagatcaagggtcgtaacttcaatatggaggttactgaccgtcatg
ctatactgaccatcaaggaggctaccaaagaaaacgatggtccataccatctacatctggagaacgagatgggatcagac
tcggctactatcaccatacaaatcaatgaccgtcccagtccaccccgcttcccattggttgagaacattcgtgaggattc
tgtagtgttgtcatggaaaccacctcttcatgatggaggcagctttattaccggatatgaaatagagaaatgtgaaccac
caatagagaactgggtccgagtgacaaccactaggatgaccttccataacatcacagggctgtcatcagggaaagaatat
aaattccgtatcatagcagaaaacttctacggaaaaagcgaaccctgtgaaccaacaagtatcgtccaaacagaggatgc
tgatgccaaaaagaaaagcaattggaagccagaaaatgtaatgtgcaccacaaagaagtcaacagatgtcaagatgattg
attttggcttggcaaccaagctgaaccctgacgaggttgtcaaagttaccacggcaacagcagagttcgcagccccagaa
atcgtggataatgagccaatcggattctacactgacatgtgggctgtgggagtcctggcctatgttctgttgagtggctt
atcaccgttcgctggcgaagatgacctagaaactctgcagaatgtaggtcgctgtgattgggagttcgctgaggaagcgt
tttccgatgtttctcccgaggccaaggatttcatcaagaaactccttatcagaaaaccacagtatgtaaattttaccatt
aaggaaaaatatcgttaa

Protein
Protein IDpfu_aug1.0_7452.1_60249.t1
Definition-
>pfu_aug1.0_7452.1_60249.t1
MDVLQTSSPMLSKLHINHEGKLEDIQSGDGIKIDNSTPKKSSLTYSNPARKDTGEYTVTVTNKHGDDSADIEVVVLGPPS
RPEGPLKVSNVKQDQMTLNWKEPTDTGGTPIENNKIVCSNSKGCEFTDSKVTDGKEYQYRVTANNEAGESEPSLPSSAIV
AKPSKDTPDAPRDVTIPKYDKNSAEIHWKEPNSDGGNPIKGYIVEKKPKSGEWVPCNNFPVKDTNFTVMGLKEGQVLEFR
VKAVNDGGEGKPSKATEPHKVRDQVFPAGAPNQPNVDKITKDSVGLSWQKPTNDGGGKLKGYIIEKKKKDGDWEEAKEVP
ATENSCTIPNLKEGDEYQFRVKAVNAAGPGEPSRPTKAVVVEEQPAKPVLNMSGVKDVTVKAGQNFQISIPYTGFPKPTA
TWINGDEEIKDSPRVALKVLDDQIVLANSKAERGDSGKYKVTLKNDSGQESGTLNVNVLDKPAAPEGPLTATDIIGEELT
LNWKAPKDDGGEKINNYIVEKRKAGSKQWQKVSSFINSPSCNVRNLEPGTEYEFRVMAENMQGVSEPLETSTPILAKLPY
DTPGAPGKPECIEFTEDSATITWDTPRKDGGNPIKGYVVEKKEKGDNRWTKANISDVLGNEYTVKGLTEGKEYEFRVAAI
NNAGVGDYSQCSEAIKARPAPVAPKVNRDFFPKDITVKKGEEFKIAIPYTGNPIPSTKWEQGTKPVDEGGRIKFENTPTE
LKLINKKAELGDAGRYTLTMENEKGKDTCSINVKVVDAPASPEGPLEVSNVTPDSCVLNWKAPKEDGGSPVSNYVVEKKD
ARTGKWEPVSKFVRGTNFEVMGLEEGHEYMFRVSAENEHGVSEPLETALGTVAQHPYTAPGAPSNPHVVDVDEGSVTLSW
NKPKDDGGKKIQGYVVEYKDPTSGRWKPHSDIPVNDTVATVDGLKKDKEYEFRVRAKNMAGLGEPSGVVGPVTPKPKYTK
ASPPGTPEVADIGKTFVDLKWDKPKNDGGAKITGYVVEKRPKGADNWVKATDYPCIDPNYTVTGLPEGSEWEFRVTAVNA
AGNSEPSLATAPIKIKEKIVGSAPEFIKKPFNMTAALGGEVHFVAQVHGKPLPDVQWYRHGVPVGSGGRIKMKQDDDVFT
LYINETYDKDAGEFTCEISNPLGRDKASCTLTILAPPKIEKEIKDQQVQVGEVLKLKIPVSGTGPFEVKVKKDNRDLPES
DRFKVTPFDDYVVLNLKGAPSKPTGPLNVGDITKSGCKLSWKPPRETGGAKIQNYIIERQEVGKPYWVTVSSHCKDCNQD
VQGLAEDHQYKFRVSAVNEHGQSEPLEAESPITAKMPFDKPDAPGIPSVTEVGGDFVSLQWDKPRSDGGGRITGYWIDKR
EHGTDNWNRVNLQPCITNMINIPNLVEDKQYEFRVFAENEAGLSKPSMASNSVKVKDPNAAVIPEFSVGMKKMTVEQGKN
ARFECEVTGTPKPEVQWYKGTRELFDDRKFEILEEGDKHILIIHDVFGEDQDEYSVKAFNRGGSRVSRAELIIKSPPKIH
LPNRFKEVSTFEKGEPVVIKIPFTGNPKPSVKWLREGEEIKGRNFNMEVTDRHAILTIKEATKENDGPYHLHLENEMGSD
SATITIQINDRPSPPRFPLVENIREDSVVLSWKPPLHDGGSFITGYEIEKCEPPIENWVRVTTTRMTFHNITGLSSGKEY
KFRIIAENFYGKSEPCEPTSIVQTEDADAKKKSNWKPENVMCTTKKSTDVKMIDFGLATKLNPDEVVKVTTATAEFAAPE
IVDNEPIGFYTDMWAVGVLAYVLLSGLSPFAGEDDLETLQNVGRCDWEFAEEAFSDVSPEAKDFIKKLLIRKPQYVNFTI
KEKYR

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