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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7466.1_60258
Locus scaffold7466.1 : 63556 ... 69948 : -
To GenomeBrowser scaffold7466.1:63556..69948
Genes list of scaffold scaffold7466.1
Synonym pfu_aug2.0_221.1_03818

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7466.1_60258.t1 1 1 ER 1 69 1.7e-31 107.9 3.8e-35 1.9e-31 107.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_7466.1_60258.t1 gi|242003343|ref|XP_002422702.1| enhancer of rudimentary protein, putative [Pediculus humanus corporis] 2.0e-28

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
egg-4cell 2
egg-Dshape 1
trochophore 2
>Adult tissues
Dshape 1
maleGonad 2
mantleEdge 1
pearlSac 1

Transcript
Transcript IDpfu_aug1.0_7466.1_60258.t1
Definition-
>pfu_aug1.0_7466.1_60258.t1
gaatttgtaagatctatgaggagcacctgaagagacttaacccagactgtccatccattacctacgacatctcacagttg
tttgacttcattgatcagcttacagatttgagctgtcttgtgtatcagaagagtacagggtcatactctcctcataacaa
agactggctgaaagagaagatctacataatgttacgcaagcaggctggaaaataa

Protein
Protein IDpfu_aug1.0_7466.1_60258.t1
Definition-
>pfu_aug1.0_7466.1_60258.t1
ICKIYEEHLKRLNPDCPSITYDISQLFDFIDQLTDLSCLVYQKSTGSYSPHNKDWLKEKIYIMLRKQAGK

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