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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7475.1_38546
Locus scaffold7475.1 : 7406 ... 11506 : +
To GenomeBrowser scaffold7475.1:7406..11506
Genes list of scaffold scaffold7475.1
Synonym pfu_aug2.0_229.1_30463

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7475.1_38546.t1 1 1 Mab-21 62 206 1.2e-33 116.5 2.4e-37 1.8e-33 115.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_7475.1_38546.t1 gi|354481634|ref|XP_003503006.1| PREDICTED: protein mab-21-like 1 [Cricetulus griseus] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-Dshape 1
>Adult tissues
Dshape 1
adductorMuscle 1

Transcript
Transcript IDpfu_aug1.0_7475.1_38546.t1
Definition-
>pfu_aug1.0_7475.1_38546.t1
atgctggcagcccagtccaaaatactatttcaactgaataagtactataatgagagggttcaaaccagacaggcaagtac
cgtgaagagtataagagaggtgtgcaaagtcgtgcaggatgtcctcaaagaagttgaggtgcaggaacctcgctttatta
gctctctaaatgaggtaaacggacgctatgaaggactggacgtcatatcgcctacggagtttgaggttgtactttatttg
aatcagatgggagttttcaattttgtggatgacggttctataccgggatgtgctgtgctcaaattaagtgacggtaggaa
acgttctatgtcgctatgggtggaatttatcacggcatctggatacttgtctgctcggaagatcagatcaaggttccaaa
ctctagtcgctcaggccgtggataaatgtagttttagggacacagtaaaaatggttgcggacactacagaagtcaaattg
cgcatcaaagacaggtatgtggtgcaaattacgccgtcattccgttgcggcggcatttggtgccgaagtgccgctcactg
gccgattccgcacattcagtggccgaatccgaatcttgtggccgaagtcaaaacgagggattcgatctcctttctagaga
aagtatttatatga

Protein
Protein IDpfu_aug1.0_7475.1_38546.t1
Definition-
>pfu_aug1.0_7475.1_38546.t1
MLAAQSKILFQLNKYYNERVQTRQASTVKSIREVCKVVQDVLKEVEVQEPRFISSLNEVNGRYEGLDVISPTEFEVVLYL
NQMGVFNFVDDGSIPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSFRDTVKMVADTTEVKL
RIKDRYVVQITPSFRCGGIWCRSAAHWPIPHIQWPNPNLVAEVKTRDSISFLEKVFI

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