Gene
| Gene Model ID | pfu_aug1.0_7478.1_31393 |
|---|---|
| Locus | scaffold7478.1 : 15066 ... 19959 : + |
| To GenomeBrowser | scaffold7478.1:15066..19959 |
| Genes list of scaffold | scaffold7478.1 |
| Synonym | pfu_aug2.0_642.1_07755 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | pitx-likeA |
| Description | NCBI BLASTP hit to gb|ADI48168.1| |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | Pitx |
| Description | NCBI BLASTP hit to EU797117 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7478.1_31393.t1 | 2 | 1 | OAR | 57 | 60 | 3.5e-09 | 35.8 | 1.0 | 15000.0 | -4.9 |
| pfu_aug1.0_7478.1_31393.t1 | 2 | 2 | OAR | 97 | 116 | 3.5e-09 | 35.8 | 2.4e-13 | 3.5e-09 | 35.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7478.1_31393.t1 | gi|297595306|gb|ADI48168.1| | Pitx [Crepidula fornicata] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7478.1_31393.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7478.1_31393.t1 atgcagtctccattcgatgactctctgtacaacggctattcaaataattattgggccaccaaagtaccgagcccactggg cacaaagaccttcccatggggcttgaactctgtgaacccccatctatcgtcggtggtgtctacacaacccatgtgttttt cgtctccatccagcagtatcagtaattctatggttgggaacgttccaaatgttccaacgaacatgtcaaacacgggcacg ccctgtccgtacgcacccccggcaccgccctatatatacagccctaacagggatcagtgcacgagcagtattgcctcttt aagactaaaagccaaacatcattctacgacgtttggttatcccccggtaaaccccgccaacccaccctatccgcgtgcca atatgccgccgtgggcaacggcgcaacagtctgaaacattcttaaaactctctatctgtgctgactataatttaaatctc ccgcgtgaaaagtcacgtgatatttga |
|
Protein
| Protein ID | pfu_aug1.0_7478.1_31393.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7478.1_31393.t1 MQSPFDDSLYNGYSNNYWATKVPSPLGTKTFPWGLNSVNPHLSSVVSTQPMCFSSPSSSISNSMVGNVPNVPTNMSNTGT PCPYAPPAPPYIYSPNRDQCTSSIASLRLKAKHHSTTFGYPPVNPANPPYPRANMPPWATAQQSETFLKLSICADYNLNL PREKSRDI |
|