Gene
| Gene Model ID | pfu_aug1.0_7479.1_17117 |
|---|---|
| Locus | scaffold7479.1 : 580 ... 13635 : - |
| To GenomeBrowser | scaffold7479.1:580..13635 |
| Genes list of scaffold | scaffold7479.1 |
| Synonym | pfu_aug2.0_357.1_23923 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7479.1_17117.t1 | 1 | 1 | Arf | 24 | 136 | 1.1e-08 | 34.4 | 8.7e-12 | 1.9e-08 | 33.7 |
| pfu_aug1.0_7479.1_17117.t1 | 1 | 1 | Ras | 25 | 137 | 2.8e-28 | 98.3 | 1.9e-31 | 4.0e-28 | 97.8 |
| pfu_aug1.0_7479.1_17117.t1 | 1 | 1 | Miro | 26 | 136 | 3.4e-15 | 56.6 | 2.9e-18 | 6.2e-15 | 55.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7479.1_17117.t1 | gi|260819612|ref|XP_002605130.1| | hypothetical protein BRAFLDRAFT_265784 [Branchiostoma floridae] | 3.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7479.1_17117.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7479.1_17117.t1 atgtacatggtctttgtaggagatagcaagcagtcctttccgtacatggggattgataatctgtgtaggagggtaatcgg aataggaaattcaaatgttgggaaaacatgtttgattaaacatttctgcgagagcaagttcagtggaggatatcaaccaa cagtcggggtggattatggtttcaaaatacaaaatgtggacggaatagatcttcgtgttcacctatgggatctttccggg agttccgagtacattgacgtcaggaacgagctgtacattaacactgacgccattttccttgtgtttgacgtcaccaacca atcaacgttcgagacgcttgacacatggatgaaagaggtgtcaaaatactcatctggtaccccagatatcatcttagtcg ctaacaaggtatgtaatggcataacaacagtcatcgtcgtcgtcatcatcatcgttgtcgtcgtcgtcagcaatcaactg aagattttactgtactttccctacatactggtacatcgtgtaatgttcatcatgaactttcaagtcaatagggtttctgt ctccatggcaactgttctaggccttggtgtacatcacattatttcttaccactaccatactatacaccaaatgaagtga |
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Protein
| Protein ID | pfu_aug1.0_7479.1_17117.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7479.1_17117.t1 MYMVFVGDSKQSFPYMGIDNLCRRVIGIGNSNVGKTCLIKHFCESKFSGGYQPTVGVDYGFKIQNVDGIDLRVHLWDLSG SSEYIDVRNELYINTDAIFLVFDVTNQSTFETLDTWMKEVSKYSSGTPDIILVANKVCNGITTVIVVVIIIVVVVVSNQL KILLYFPYILVHRVMFIMNFQVNRVSVSMATVLGLGVHHIISYHYHTIHQMK |
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