Gene
| Gene Model ID | pfu_aug1.0_7489.1_17122 |
|---|---|
| Locus | scaffold7489.1 : 5416 ... 24137 : + |
| To GenomeBrowser | scaffold7489.1:5416..24137 |
| Genes list of scaffold | scaffold7489.1 |
| Synonym | pfu_aug2.0_972.1_08056 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7489.1_17122.t1 | 1 | 1 | Neur_chan_LBD | 1 | 114 | 7.4e-30 | 103.7 | 2.1e-33 | 1.0e-29 | 103.2 |
| pfu_aug1.0_7489.1_17122.t1 | 1 | 1 | Neur_chan_memb | 123 | 212 | 2.4e-28 | 99.6 | 6.3e-32 | 3.1e-28 | 99.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7489.1_17122.t1 | gi|47222620|emb|CAG02985.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7489.1_17122.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7489.1_17122.t1 atgagtttttatctacgccaaagatggaacgatagtagacttgtatacaatgaaagtctgggtatcgacgtcatagagct agattcccggataatggacagtatctggactcctgacatttacataatcaacgaaaaagaggctcgcttccattacgtca caatgccaaatagaatgatgtatctttatccagatggaaatatcctttacagtgcaagaatatctggtaccttttcttgc ttactacagctacacaaatatccgctagacaatcaaatctgcgacttacgcatggaaagctttcaatatacatgtgtcgg tatgaagatatttttagagagagatattggatattatatgatccagatatatgtcccaagtattttgattgtgactctct cctttgtgaacttctggcttaacgtggatgcggtgcccgctagaattactctaggtctgctgaccgttcttacaatgact acacaaagtgtagcagctgtagcaagcatacagaaagtatcgtacataaaggcgctggacatctggttgcaggcatgcct catttttgttttcgcggctttgctggaatttgcatgtgtaaatgtgtcattccgagtggaaacgcgacggaaatcggtag cagatttaccggcattgatagcacaatcaacagttgatgggaaacctcaaacgaacggccattgcaaacagaatcgtatg aaggtagcaactatttttcggtcaatctcccctagtgttatatcgatacagaagtctatcatagaggagcctttgtttga gatagaagtacctttgttggaaacatag |
|
Protein
| Protein ID | pfu_aug1.0_7489.1_17122.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7489.1_17122.t1 MSFYLRQRWNDSRLVYNESLGIDVIELDSRIMDSIWTPDIYIINEKEARFHYVTMPNRMMYLYPDGNILYSARISGTFSC LLQLHKYPLDNQICDLRMESFQYTCVGMKIFLERDIGYYMIQIYVPSILIVTLSFVNFWLNVDAVPARITLGLLTVLTMT TQSVAAVASIQKVSYIKALDIWLQACLIFVFAALLEFACVNVSFRVETRRKSVADLPALIAQSTVDGKPQTNGHCKQNRM KVATIFRSISPSVISIQKSIIEEPLFEIEVPLLET |
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