Gene
| Gene Model ID | pfu_aug1.0_7500.1_17130 |
|---|---|
| Locus | scaffold7500.1 : 33026 ... 36194 : + |
| To GenomeBrowser | scaffold7500.1:33026..36194 |
| Genes list of scaffold | scaffold7500.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7500.1_17130.t1 | 1 | 1 | dCMP_cyt_deam_1 | 103 | 243 | 2.6e-13 | 49.5 | 7.3e-17 | 5.4e-13 | 48.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7500.1_17130.t1 | gi|319401871|ref|NP_001187388.1| | tRNA-specific adenosine deaminase-like protein 3 [Ictalurus punctatus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7500.1_17130.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7500.1_17130.t1 atgccagattacagtcatctcaagagagtcaaaagtgtcagaaccaatgataaggcaacattgctgcaagttataatctg tcgcaaggaaagagaaaatgaccagtgtttagtagatttgtcagggaatgacgtgtataaggtattgagtcgaccctttg ttgtgaaggttccacaatacgctcctctcaccaggaaacagtatgaggattgtatacaaaactggccagttacattccat gaaaataaacgaataaaggatcttgtcaacaagtcatttttcacaaaaaaggaagtaataaatattgaacagaacatgct taaagctgtcgagtgtgcaaaattaggattagagaagaaacaattagcaagaggagcagtggtagtggattctaaaagga acgaagttatagcagtgtcttatgacatgcggcatggtgaacatccactaaaacacgcggtgatgctatgtatagatttg gtggcccattcacaaggtggaggtatgtggtcaccacccgaggacactcaagtactggaaaatagtgacgatggtgaata tactgaagggaatataaaatgtccagcttacagaaaactgtcaccagagcagagtgcttctgatacatgttacatatgta caggcctggatttatatgtgacacatgaaccatgtataatgtgtgctatggcacttgttcactcaaggataggcagagtg ttttatggagtatcgacccctgatggtgccctcgggacaaagttcaaagtgcattgccaaaaagaacttaatcatcatta tgatgtgttcaagaatgtattgagagaggaatgtgaaaaattcaaattacaattgtga |
|
Protein
| Protein ID | pfu_aug1.0_7500.1_17130.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7500.1_17130.t1 MPDYSHLKRVKSVRTNDKATLLQVIICRKERENDQCLVDLSGNDVYKVLSRPFVVKVPQYAPLTRKQYEDCIQNWPVTFH ENKRIKDLVNKSFFTKKEVINIEQNMLKAVECAKLGLEKKQLARGAVVVDSKRNEVIAVSYDMRHGEHPLKHAVMLCIDL VAHSQGGGMWSPPEDTQVLENSDDGEYTEGNIKCPAYRKLSPEQSASDTCYICTGLDLYVTHEPCIMCAMALVHSRIGRV FYGVSTPDGALGTKFKVHCQKELNHHYDVFKNVLREECEKFKLQL |
|