Gene
| Gene Model ID | pfu_aug1.0_755.1_07656 |
|---|---|
| Locus | scaffold755.1 : 39586 ... 56325 : - |
| To GenomeBrowser | scaffold755.1:39586..56325 |
| Genes list of scaffold | scaffold755.1 |
| Synonym | pfu_aug2.0_238.1_27085 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | heat shock protein 4-like |
| Description | BLASTP best hit to NCBI Accession FJ267519 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_755.1_07656.t1 | 4 | 1 | HSP70 | 3 | 229 | 0.0 | 385.5 | 0.0 | 0.0 | 254.3 |
| pfu_aug1.0_755.1_07656.t1 | 2 | 1 | MreB_Mbl | 119 | 217 | 5.9e-08 | 31.6 | 9.6e-10 | 4.7e-06 | 25.4 |
| pfu_aug1.0_755.1_07656.t1 | 4 | 2 | HSP70 | 243 | 371 | 0.0 | 385.5 | 1.7e-35 | 8.2e-32 | 109.8 |
| pfu_aug1.0_755.1_07656.t1 | 2 | 2 | MreB_Mbl | 250 | 320 | 5.9e-08 | 31.6 | 0.003 | 15.0 | 4.0 |
| pfu_aug1.0_755.1_07656.t1 | 4 | 3 | HSP70 | 498 | 617 | 0.0 | 385.5 | 1.4e-10 | 6.8e-07 | 27.5 |
| pfu_aug1.0_755.1_07656.t1 | 4 | 4 | HSP70 | 640 | 715 | 0.0 | 385.5 | 0.02 | 98.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_755.1_07656.t1 | gi|126290131|ref|XP_001366416.1| | PREDICTED: heat shock 70 kDa protein 4 [Monodelphis domestica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_755.1_07656.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_755.1_07656.t1 atgtcggtggtaggctttgatctcgggagcctcacttgtttcattggagtggcccgagccggtggaatcgaaactatcgc caatgaatacagtgacagatgcactccgtcgtttgtgtcgttgatggagaataatagatgcatgggagtctctgccaaga accagagtgtaacaaacttcaaaaacacattgtcatgttttaaacgattcttaggtcgtcagttcaaagatccttatgtg cagaaggagatgaatgattacaccaaatctttccagattgtcgaaggtccctctggaaatgtcttatttaaggtccatta cttaggagaagaaacagaattttcgccggagcagattactggaatgatgctaaccaagctgagagagacggccgaaaatg ccctgaaaacaaaagtagtggatgtggtggtatctgtaccatcatttttcacggacattgagcggagagccatgcttgat gcttgtcaaataggaggactcaactgcctaaaactcatgaatgatacgactgcagtggctcttgcatatggaatctacaa agaggatctcccggcagaaaatgagaagccacgtaatgtagtatttgtggatgtcgggtattgttcaacacaagtggcag ctgtagctttcaacaaaggaaaactgaagaagaggagaacaagttcttccctttctgttgctttgcactcatccgatgtt gccaacataaatggtagagagaagtttgaggagatgtcagcgggcttattacagcagtttgaggttgtactggccagggt tcaagaggaatgtaaacttgcaccaggtgacatatactctgtagaaatgatgggcggatcgtcacgagtaccagctatca aacagcttgttaataaggtgtttggcaaagagccaagtttcactttgaatgccgacgaagctgtggccagaggatgtgct ctacagtgcgctattctatcgccaacattccgtgtacgagatttcaccattctggatgcacagcaatatcctattacatt gagctgggaaggcgacacagattcccgtagtacatgtagctacattagaaatgtcaaatctttggaggtgtttcccaagt tccaccagattccgcagtctaagatgttgacgttctataggaaggaggcattccagcttgacgctaggtactcgataccc cctgatgttcctataccagacccatacttaggtatgcatgctnacttccgaagaggacgaagtacatgtattgaaagaaa ttctggtgtgttcctaaaatacatcattgcaaatctatactttagcaatctaattccctctgacttgttccatatattct atgtattgactcccatggaaactgatcaagattctggtgatcaacagaaagcagaaaatggcaacaaagataaatctgag aataaagaggagaagagtaaagaagatggtgataagaaaaagaaagaaacgccaaaaaagaaaacaaagaaaacagatct ccccgtagaagaacttgtaccgcagatgtccagaggggatgtcgcaaagttatttgaaaaggagttgaaaatgatcgagc aggataaactggaaaaggacagagcagatgccaagaatgctgtagaggaatatgtatatgacatgagggataaattatac ggcacgttagaggacttcattatggaatcagatcgtgaaaagctgagtaagttgttacaggaaacagaggactggctgta tgaagacggcgacgattgtcagaaaaatgtttatatcgagaaattaaagcagttaaaggctctaggccagccagtagttg acagatatagagaatcccaagagagacctgtagcatttgaagaattggcaaggtcccttacacatgtccgcaagtttgta gatctgtttgagaaaaaggatgagaaatataatcacattgaccaggctgatgtcgacaaagtcaaaaaatgtctgaaaga aaaatcagaatggtacgagaaacaacttaacaatcagaacaaacagaagaagtatgaaaacccgtctgtgttagcaactc agatcgtagctactagaaaggaattggaatcaacttgcagtcctgtcataaacaaacccaagccaaaagtcgaacctcca aaagaaacaaagaaggaaggaaaagatggcaaaacggaaaacaaagaacaaaagaatgactctacccagcaaaatgctga aaatacaaacggaaatgcggaaagtggcaaacctgaggaacagtctcaaagtactgaacagaatactgacgtagatatag attga |
|
Protein
| Protein ID | pfu_aug1.0_755.1_07656.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_755.1_07656.t1 MSVVGFDLGSLTCFIGVARAGGIETIANEYSDRCTPSFVSLMENNRCMGVSAKNQSVTNFKNTLSCFKRFLGRQFKDPYV QKEMNDYTKSFQIVEGPSGNVLFKVHYLGEETEFSPEQITGMMLTKLRETAENALKTKVVDVVVSVPSFFTDIERRAMLD ACQIGGLNCLKLMNDTTAVALAYGIYKEDLPAENEKPRNVVFVDVGYCSTQVAAVAFNKGKLKKRRTSSSLSVALHSSDV ANINGREKFEEMSAGLLQQFEVVLARVQEECKLAPGDIYSVEMMGGSSRVPAIKQLVNKVFGKEPSFTLNADEAVARGCA LQCAILSPTFRVRDFTILDAQQYPITLSWEGDTDSRSTCSYIRNVKSLEVFPKFHQIPQSKMLTFYRKEAFQLDARYSIP PDVPIPDPYLGMHAXFRRGRSTCIERNSGVFLKYIIANLYFSNLIPSDLFHIFYVLTPMETDQDSGDQQKAENGNKDKSE NKEEKSKEDGDKKKKETPKKKTKKTDLPVEELVPQMSRGDVAKLFEKELKMIEQDKLEKDRADAKNAVEEYVYDMRDKLY GTLEDFIMESDREKLSKLLQETEDWLYEDGDDCQKNVYIEKLKQLKALGQPVVDRYRESQERPVAFEELARSLTHVRKFV DLFEKKDEKYNHIDQADVDKVKKCLKEKSEWYEKQLNNQNKQKKYENPSVLATQIVATRKELESTCSPVINKPKPKVEPP KETKKEGKDGKTENKEQKNDSTQQNAENTNGNAESGKPEEQSQSTEQNTDVDID |
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