Gene
| Gene Model ID | pfu_aug1.0_7550.1_45678 |
|---|---|
| Locus | scaffold7550.1 : 10346 ... 16032 : + |
| To GenomeBrowser | scaffold7550.1:10346..16032 |
| Genes list of scaffold | scaffold7550.1 |
| Synonym | NA |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715611 (MgC1q32). 86 bits, 2e-15 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7550.1_45678.t1 | 1 | 1 | C1q | 45 | 167 | 1.4e-24 | 86.4 | 2.5e-28 | 1.8e-24 | 86.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7550.1_45678.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7550.1_45678.t1 atgataatgtcactttctgtcgttgactcagcaaaatatctgaagcataccaaacttgaacttttgaaggaaattattgg acgatacttcagcaacgtgacaaatgttcgtgaacgacatcagcctaaagttgcctttgcagcttacctttcacatagac tttcaaataagaatgcaatggtcataaagtttgactcagtgttaacaaacgaaggtaacggatatgataaaaccactggg acattcacagctccgaaaaatggtatgtatctgttttcatggaagattctgtctcatggaggaaagaaagctcatgctca tctctacgtgaacaataaagaaacatggctgaactacgccgacgatggacctcaaggttatgataccggaagcgcaacag tgattctgcgcctgaatcaaaccgacaaagctgagatacgtacacatggaacaagcaactaccttcatgaagtttacacc actttcactggaaccttattgtacaactag |
|
Protein
| Protein ID | pfu_aug1.0_7550.1_45678.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7550.1_45678.t1 MIMSLSVVDSAKYLKHTKLELLKEIIGRYFSNVTNVRERHQPKVAFAAYLSHRLSNKNAMVIKFDSVLTNEGNGYDKTTG TFTAPKNGMYLFSWKILSHGGKKAHAHLYVNNKETWLNYADDGPQGYDTGSATVILRLNQTDKAEIRTHGTSNYLHEVYT TFTGTLLYN |
|