Gene
Gene Model ID | pfu_aug1.0_7550.1_45678 |
---|---|
Locus | scaffold7550.1 : 10346 ... 16032 : + |
To GenomeBrowser | scaffold7550.1:10346..16032 |
Genes list of scaffold | scaffold7550.1 |
Synonym | NA |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | C1q domain containing protein |
Description | Best hit to FR715611 (MgC1q32). 86 bits, 2e-15 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7550.1_45678.t1 | 1 | 1 | C1q | 45 | 167 | 1.4e-24 | 86.4 | 2.5e-28 | 1.8e-24 | 86.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_7550.1_45678.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7550.1_45678.t1 atgataatgtcactttctgtcgttgactcagcaaaatatctgaagcataccaaacttgaacttttgaaggaaattattgg acgatacttcagcaacgtgacaaatgttcgtgaacgacatcagcctaaagttgcctttgcagcttacctttcacatagac tttcaaataagaatgcaatggtcataaagtttgactcagtgttaacaaacgaaggtaacggatatgataaaaccactggg acattcacagctccgaaaaatggtatgtatctgttttcatggaagattctgtctcatggaggaaagaaagctcatgctca tctctacgtgaacaataaagaaacatggctgaactacgccgacgatggacctcaaggttatgataccggaagcgcaacag tgattctgcgcctgaatcaaaccgacaaagctgagatacgtacacatggaacaagcaactaccttcatgaagtttacacc actttcactggaaccttattgtacaactag |
Protein
Protein ID | pfu_aug1.0_7550.1_45678.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7550.1_45678.t1 MIMSLSVVDSAKYLKHTKLELLKEIIGRYFSNVTNVRERHQPKVAFAAYLSHRLSNKNAMVIKFDSVLTNEGNGYDKTTG TFTAPKNGMYLFSWKILSHGGKKAHAHLYVNNKETWLNYADDGPQGYDTGSATVILRLNQTDKAEIRTHGTSNYLHEVYT TFTGTLLYN |