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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7553.1_31408
Locus scaffold7553.1 : 35729 ... 39945 : -
To GenomeBrowser scaffold7553.1:35729..39945
Genes list of scaffold scaffold7553.1
Synonym pfu_aug2.0_204.1_13782

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7553.1_31408.t1 2 1 Glyco_hydro_1 3 127 0.0 297.1 0.0 0.0 164.9
pfu_aug1.0_7553.1_31408.t1 2 2 Glyco_hydro_1 124 246 0.0 297.1 2.60642e-43 3.8e-39 134.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_7553.1_31408.t1 gi|260833674|ref|XP_002611837.1| hypothetical protein BRAFLDRAFT_123363 [Branchiostoma floridae] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_7553.1_31408.t1
Definition-
>pfu_aug1.0_7553.1_31408.t1
atggctgacggtacactgaggacggtcaacgctaagggtgtccagtattacaacaacttgattgacgaactcctggccaa
caacatagaaccaatggttactttgtatcattgggacctaccactggccctacaggacctcggaggattccagaatgaca
gcattgtggactactttaacgactatgccaggttctgcttctccatgtttggggaccgggtgaagctttggatcacatac
aacgaagcatttgtagtatcctggcttggatacggtataggagttttcgcccctggagtaagcagtgctgacaccggtgt
ctacaaggtggcgcataacatcataaggtcacatgtcaaagcctatcacacgtcaaggtcagactggttgcgtgtaaatc
catggggcttacgtcgtctgctgaagtgggtcaaagatcgctatggtaacccgccagtctacgtcacggagaacggagta
tcagacgacggagaaattcaggatgaatctaggtcaaggttttaccgtctgtacattaacgaaatgctcaaagctataaa
gagagacggctgtgacgttaaaggatacatggcgtggtcacttatggacaattttgagtggactagcggattcacacaga
agtttggattgtttaatgtcaactttgacgatcaaaatcggccaagaaagcccaaaaactctgttagtgcatactcaaaa
atcatcagcgataatggattcccgctatcctga

Protein
Protein IDpfu_aug1.0_7553.1_31408.t1
Definition-
>pfu_aug1.0_7553.1_31408.t1
MADGTLRTVNAKGVQYYNNLIDELLANNIEPMVTLYHWDLPLALQDLGGFQNDSIVDYFNDYARFCFSMFGDRVKLWITY
NEAFVVSWLGYGIGVFAPGVSSADTGVYKVAHNIIRSHVKAYHTSRSDWLRVNPWGLRRLLKWVKDRYGNPPVYVTENGV
SDDGEIQDESRSRFYRLYINEMLKAIKRDGCDVKGYMAWSLMDNFEWTSGFTQKFGLFNVNFDDQNRPRKPKNSVSAYSK
IISDNGFPLS

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