Gene
| Gene Model ID | pfu_aug1.0_7553.1_31408 |
|---|---|
| Locus | scaffold7553.1 : 35729 ... 39945 : - |
| To GenomeBrowser | scaffold7553.1:35729..39945 |
| Genes list of scaffold | scaffold7553.1 |
| Synonym | pfu_aug2.0_204.1_13782 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7553.1_31408.t1 | 2 | 1 | Glyco_hydro_1 | 3 | 127 | 0.0 | 297.1 | 0.0 | 0.0 | 164.9 |
| pfu_aug1.0_7553.1_31408.t1 | 2 | 2 | Glyco_hydro_1 | 124 | 246 | 0.0 | 297.1 | 2.60642e-43 | 3.8e-39 | 134.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7553.1_31408.t1 | gi|260833674|ref|XP_002611837.1| | hypothetical protein BRAFLDRAFT_123363 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7553.1_31408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7553.1_31408.t1 atggctgacggtacactgaggacggtcaacgctaagggtgtccagtattacaacaacttgattgacgaactcctggccaa caacatagaaccaatggttactttgtatcattgggacctaccactggccctacaggacctcggaggattccagaatgaca gcattgtggactactttaacgactatgccaggttctgcttctccatgtttggggaccgggtgaagctttggatcacatac aacgaagcatttgtagtatcctggcttggatacggtataggagttttcgcccctggagtaagcagtgctgacaccggtgt ctacaaggtggcgcataacatcataaggtcacatgtcaaagcctatcacacgtcaaggtcagactggttgcgtgtaaatc catggggcttacgtcgtctgctgaagtgggtcaaagatcgctatggtaacccgccagtctacgtcacggagaacggagta tcagacgacggagaaattcaggatgaatctaggtcaaggttttaccgtctgtacattaacgaaatgctcaaagctataaa gagagacggctgtgacgttaaaggatacatggcgtggtcacttatggacaattttgagtggactagcggattcacacaga agtttggattgtttaatgtcaactttgacgatcaaaatcggccaagaaagcccaaaaactctgttagtgcatactcaaaa atcatcagcgataatggattcccgctatcctga |
|
Protein
| Protein ID | pfu_aug1.0_7553.1_31408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7553.1_31408.t1 MADGTLRTVNAKGVQYYNNLIDELLANNIEPMVTLYHWDLPLALQDLGGFQNDSIVDYFNDYARFCFSMFGDRVKLWITY NEAFVVSWLGYGIGVFAPGVSSADTGVYKVAHNIIRSHVKAYHTSRSDWLRVNPWGLRRLLKWVKDRYGNPPVYVTENGV SDDGEIQDESRSRFYRLYINEMLKAIKRDGCDVKGYMAWSLMDNFEWTSGFTQKFGLFNVNFDDQNRPRKPKNSVSAYSK IISDNGFPLS |
|