Gene
| Gene Model ID | pfu_aug1.0_7575.1_02465 |
|---|---|
| Locus | scaffold7575.1 : 22116 ... 38498 : + |
| To GenomeBrowser | scaffold7575.1:22116..38498 |
| Genes list of scaffold | scaffold7575.1 |
| Synonym | pfu_aug2.0_841.1_04623 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7575.1_02465.t1 | 2 | 1 | ResIII | 44 | 180 | 1.4e-07 | 31.5 | 2.6e-10 | 4.4e-07 | 29.9 |
| pfu_aug1.0_7575.1_02465.t1 | 2 | 1 | DEAD | 48 | 124 | 1.8e-07 | 30.8 | 3.0e-09 | 5.0e-06 | 26.1 |
| pfu_aug1.0_7575.1_02465.t1 | 2 | 2 | DEAD | 193 | 267 | 1.8e-07 | 30.8 | 0.064 | 110.0 | 2.2 |
| pfu_aug1.0_7575.1_02465.t1 | 2 | 2 | ResIII | 197 | 247 | 1.4e-07 | 31.5 | 0.62 | 1000.0 | -0.7 |
| pfu_aug1.0_7575.1_02465.t1 | 1 | 1 | RIG-I_C-RD | 321 | 434 | 3.5e-17 | 62.4 | 3.9e-20 | 6.4e-17 | 61.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7575.1_02465.t1 | gi|260817577|ref|XP_002603662.1| | hypothetical protein BRAFLDRAFT_235564 [Branchiostoma floridae] | 2.0e-12 |
Transcript
| Transcript ID | pfu_aug1.0_7575.1_02465.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7575.1_02465.t1 atggacgacgaggtcaatcctcaaaagagtgacgacattgatgtaggattcgaaaaattattattgtcagatgaagaaaa tgaagataaagaggatgagagccaagatgaaaggaaagagcgaggattggagttgcgaaactaccagctagagcttgcag cctcagctgtaacaggtcaaaataccatcatacatgcagctactggagcaggaaagacaagagtggccttttacattatc aaaagacatttggacaagaacccaagcggtaaagttgctgtgcttgccgataagaattttcttgtgagacaacattattt ggcactcaaggctttccttccggatttagagatataccgtgaagtactgtacatcaaatgttacttgaattatgaatacg ccatgtctgtacttgagaggagacttaaaaaagacagacttggacaatactctgtgtccaatgaatcaacagaggcggag tttgctgaatttgcaagagatttgatcacatccatgaagtctgaagcaaaaaacatacaaacacgaggacgaaggagccc aatagactttttgctggatcaactagagaagcaaaatgaagaacgaagattcatacttttcgtcaaaacaagggagtttg cagaaatgctgaatgactttttgacgagaaaaggttacaagtgttctgcatttactggagcaagcgccgcatccgacgag ggaggacgaatcagaagaaaaactggtaatcgcatagtacttgcgaatttgaaagattccctgagagatgtagtcaatat tcaacgtggacgtctaatggacgaagctgtaaaggatgttctagcaatggatgatgccactctgatgtccataattgaga gaaaacagagacagatatgcgaaagcgaaaggagatcacaggggaccgtatcaaaggttcctaaattggacaactgtaga ttcaaaatgacctgcaaatcgtgtggaaaatttgatgtcgactgcagcaaaataagaagcattgacggcgcccatcacgt acttgtcgaaaaggacatttggaaatacatgacggcacaacctttcccgaaaaaccctcctcgtttccatgaagatatca tattgcagggtaagctattcggaaatggaaaaaatggttgtacacaccaatggggaacagtcttttcttacaaaggggtc aggctaccagctatttcacacaaactgttggcagtaaaagacacagacacaaaaagaacatggaagattggaaaatggga ggaggcacctttcagtatactacccattagtgaagatgatctcaatcttatggcgaccgcagaagaaaaataa |
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Protein
| Protein ID | pfu_aug1.0_7575.1_02465.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7575.1_02465.t1 MDDEVNPQKSDDIDVGFEKLLLSDEENEDKEDESQDERKERGLELRNYQLELAASAVTGQNTIIHAATGAGKTRVAFYII KRHLDKNPSGKVAVLADKNFLVRQHYLALKAFLPDLEIYREVLYIKCYLNYEYAMSVLERRLKKDRLGQYSVSNESTEAE FAEFARDLITSMKSEAKNIQTRGRRSPIDFLLDQLEKQNEERRFILFVKTREFAEMLNDFLTRKGYKCSAFTGASAASDE GGRIRRKTGNRIVLANLKDSLRDVVNIQRGRLMDEAVKDVLAMDDATLMSIIERKQRQICESERRSQGTVSKVPKLDNCR FKMTCKSCGKFDVDCSKIRSIDGAHHVLVEKDIWKYMTAQPFPKNPPRFHEDIILQGKLFGNGKNGCTHQWGTVFSYKGV RLPAISHKLLAVKDTDTKRTWKIGKWEEAPFSILPISEDDLNLMATAEEK |
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