Gene
| Gene Model ID | pfu_aug1.0_76.1_29063 |
|---|---|
| Locus | scaffold76.1 : 32896 ... 54848 : + |
| To GenomeBrowser | scaffold76.1:32896..54848 |
| Genes list of scaffold | scaffold76.1 |
| Synonym | pfu_aug2.0_46.1_20104 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_76.1_29063.t1 | 3 | 1 | Atx10homo_assoc | 65 | 81 | 2.0e-26 | 91.6 | 0.012 | 180.0 | 1.9 |
| pfu_aug1.0_76.1_29063.t1 | 3 | 2 | Atx10homo_assoc | 113 | 135 | 2.0e-26 | 91.6 | 0.0056 | 83.0 | 3.0 |
| pfu_aug1.0_76.1_29063.t1 | 3 | 3 | Atx10homo_assoc | 273 | 359 | 2.0e-26 | 91.6 | 5.8e-28 | 8.6e-24 | 83.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_76.1_29063.t1 | gi|73968907|ref|XP_531697.2| | PREDICTED: ataxin-10 isoformX1 [Canis lupus familiaris] | 7.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_76.1_29063.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_76.1_29063.t1 atgacttgtcatgacgcgctgaaatccgttggaacatttaaaataaacattcgcaagacaatgtccaatttgactaagga ggatagcttggtttttctctcagctttagccaaacttacatcacattacaatgggcagaggagccagcataaaattccag ttatccagtgtttgacggagttattccgcagccttcggaattcttgtgtcgactgtccgcagaaccaggactatgtatca gagagccctcaatattttgtctgtgttgctgatcttgtggggaaactcccattggaagatgatggtagcagagaagagat gactatcttgtatagatgtctcgttcagttccttggaaactgtgttacacaacatgagaggaatcagcaactggttttgg aacatgtttttcctatgtttagattgctactcgagtttggggatgacaagctcgctagttttacatgtatggtgattcac aattgtttaatgggatgctgtcctatccaaaaagatacatgccttgacagcacagctatgataggagtacttgtggctgt aatacgaaactctgcagtaggagggagtgaatttagcctttttgtaatggatgatatcctccatttgccttcaacaatca ttttcaaagttctggaacaactttcaccagtagaaaaacaacttgtgacggaagtacttatagataagcttaaaacagta cagaactctgatagtgataccaacatggcaccctctctagaaagtctttgttgcatagcaactgatttcaaggatatgtc aaaggatattctgcttgtaacagaacatcatgactcagacacacaggtacgtgagatggacggaatagccttaattttag atcaaacaaacatcgatggaagaaatccttttataacacagtgggcggtcctggccattcgtaacctttgtgacaataac caggaaaacaaagcagttttagcgtctctgaaaatggaaggtttggacaggaatgcgtctatcctggaggagatgggaat caatgctgaagtacggggagacaaggtgtacgtgaaaccctcaggaaagtga |
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Protein
| Protein ID | pfu_aug1.0_76.1_29063.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_76.1_29063.t1 MTCHDALKSVGTFKINIRKTMSNLTKEDSLVFLSALAKLTSHYNGQRSQHKIPVIQCLTELFRSLRNSCVDCPQNQDYVS ESPQYFVCVADLVGKLPLEDDGSREEMTILYRCLVQFLGNCVTQHERNQQLVLEHVFPMFRLLLEFGDDKLASFTCMVIH NCLMGCCPIQKDTCLDSTAMIGVLVAVIRNSAVGGSEFSLFVMDDILHLPSTIIFKVLEQLSPVEKQLVTEVLIDKLKTV QNSDSDTNMAPSLESLCCIATDFKDMSKDILLVTEHHDSDTQVREMDGIALILDQTNIDGRNPFITQWAVLAIRNLCDNN QENKAVLASLKMEGLDRNASILEEMGINAEVRGDKVYVKPSGK |
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