Gene
| Gene Model ID | pfu_aug1.0_7605.1_53003 |
|---|---|
| Locus | scaffold7605.1 : 9526 ... 19987 : - |
| To GenomeBrowser | scaffold7605.1:9526..19987 |
| Genes list of scaffold | scaffold7605.1 |
| Synonym | pfu_aug2.0_255.1_17186 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7605.1_53003.t1 | 3 | 1 | Rpp20 | 85 | 101 | 1.2e-16 | 60.6 | 0.069 | 510.0 | 0.2 |
| pfu_aug1.0_7605.1_53003.t1 | 3 | 2 | Rpp20 | 121 | 146 | 1.2e-16 | 60.6 | 4.5e-08 | 0.00033 | 20.3 |
| pfu_aug1.0_7605.1_53003.t1 | 1 | 1 | Alba | 123 | 178 | 4.2e-14 | 51.8 | 1.1e-17 | 7.9e-14 | 51.0 |
| pfu_aug1.0_7605.1_53003.t1 | 3 | 3 | Rpp20 | 147 | 214 | 1.2e-16 | 60.6 | 2.2e-13 | 1.6e-09 | 37.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7605.1_53003.t1 | gi|291243112|ref|XP_002741451.1| | PREDICTED: ribonuclease P protein subunit p20-like [Saccoglossus kowalevskii] | 2.0e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7605.1_53003.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7605.1_53003.t1 gtgagcgatgtggcccccttgggcctcttgttacaaatgaaagttgcatgataaaagcagctttcttgaacaatttcacc tacctgatgtcaggaacttaccttgttttgactattataaagaaggtgtcggaatgcttgcatcttaaggagcatttccg aagtgagccgcacagacatttgattcttaagtttcctgcaaattttttcggcttttgtaatttttttaaagattatcacg caatgaaagctgatgacagttctccaagtgatcagaaaaaatcaaagactgctgaaataaaggaagctttggatcgtgaa gaatatgctctacgcaaaaggctgcctaagaaattaccaaacagaaagaatgatgtgtatgtaacacgtaaaacatgctt caaaagtcaactagaaaggtgccaaaaacttctagattcaggaaatgaagtctgcattcatggacttggggcagctataa atagagctgtaaatctggccatgcaacttaaaaccaatggacaaggatctgtagaaactgcagcacatacatccactgtg gaactaatggatgaccttgacccaaataatgatgacctagagccagagacattaagtagaaataattctgcagtacatat cagagtttataagttgaatcctattgtgattgaagtaccaacttcaaaagggacaaaagtaacttga |
|
Protein
| Protein ID | pfu_aug1.0_7605.1_53003.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7605.1_53003.t1 ERCGPLGPLVTNESCMIKAAFLNNFTYLMSGTYLVLTIIKKVSECLHLKEHFRSEPHRHLILKFPANFFGFCNFFKDYHA MKADDSSPSDQKKSKTAEIKEALDREEYALRKRLPKKLPNRKNDVYVTRKTCFKSQLERCQKLLDSGNEVCIHGLGAAIN RAVNLAMQLKTNGQGSVETAAHTSTVELMDDLDPNNDDLEPETLSRNNSAVHIRVYKLNPIVIEVPTSKGTKVT |
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