Gene
| Gene Model ID | pfu_aug1.0_76845.1_49193 |
|---|---|
| Locus | scaffold76845.1 : 1 ... 3146 : + |
| To GenomeBrowser | scaffold76845.1:1..3146 |
| Genes list of scaffold | scaffold76845.1 |
| Synonym | pfu_aug2.0_433.1_10765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_76845.1_49193.t1 | 2 | 1 | TcdB_toxin_midN | 8 | 52 | 5.6e-07 | 29.1 | 3.7e-05 | 0.078 | 12.4 |
| pfu_aug1.0_76845.1_49193.t1 | 2 | 1 | VCBS | 12 | 34 | 3.6e-10 | 40.0 | 1.8e-06 | 0.0038 | 17.5 |
| pfu_aug1.0_76845.1_49193.t1 | 3 | 1 | FG-GAP | 23 | 47 | 1.8e-10 | 40.2 | 3.0e-07 | 0.00064 | 19.3 |
| pfu_aug1.0_76845.1_49193.t1 | 2 | 2 | VCBS | 24 | 115 | 3.6e-10 | 40.0 | 8.0e-11 | 1.7e-07 | 31.4 |
| pfu_aug1.0_76845.1_49193.t1 | 3 | 2 | FG-GAP | 59 | 72 | 1.8e-10 | 40.2 | 0.048 | 100.0 | 2.7 |
| pfu_aug1.0_76845.1_49193.t1 | 2 | 2 | TcdB_toxin_midN | 92 | 120 | 5.6e-07 | 29.1 | 4.2e-06 | 0.0089 | 15.4 |
| pfu_aug1.0_76845.1_49193.t1 | 3 | 3 | FG-GAP | 100 | 126 | 1.8e-10 | 40.2 | 1.5e-07 | 0.00033 | 20.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_76845.1_49193.t1 | gi|198412463|ref|XP_002121589.1| | 1.0e-20 |
Transcript
| Transcript ID | pfu_aug1.0_76845.1_49193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_76845.1_49193.t1 tcctgattttcagatacactcgcgtaccattgatgccacaccaggagctatgtttgatgtagaaatctgtgacgtaaaca atgacggaaaactggatttacttacaacgtcaaatggaaataatggctcagttatcatttatgaaatcccgacagatttc agtgaccgtccccttatactggtatctggagacgacgacggaagagcatacatcatggagccgacttcctctgactctaa taactggtcctacagcaaaagggcgttttatgacaccggaagtggaactgtgggtcagatggccttcgctgatgttgatg gtgatggatatgttgacatttttgttccaagttacactgttggtgaagttcttgtatacacattcgcaccttatattgcg tttggttga |
|
Protein
| Protein ID | pfu_aug1.0_76845.1_49193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_76845.1_49193.t1 PDFQIHSRTIDATPGAMFDVEICDVNNDGKLDLLTTSNGNNGSVIIYEIPTDFSDRPLILVSGDDDGRAYIMEPTSSDSN NWSYSKRAFYDTGSGTVGQMAFADVDGDGYVDIFVPSYTVGEVLVYTFAPYIAFG |
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