Gene
| Gene Model ID | pfu_aug1.0_77.1_50601 |
|---|---|
| Locus | scaffold77.1 : 20306 ... 30683 : + |
| To GenomeBrowser | scaffold77.1:20306..30683 |
| Genes list of scaffold | scaffold77.1 |
| Synonym | pfu_aug2.0_11.1_03386 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_77.1_50601.t1 | 1 | 1 | SMC_hinge | 32 | 144 | 3.8e-26 | 91.4 | 5.0e-29 | 1.2e-25 | 89.7 |
| pfu_aug1.0_77.1_50601.t1 | 1 | 1 | SMC_N | 364 | 682 | 4.2e-26 | 91.5 | 2.9e-29 | 7.1e-26 | 90.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_77.1_50601.t1 | gi|241636357|ref|XP_002410619.1| | SMC protein, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_77.1_50601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_77.1_50601.t1 atgattggaaaggccacattgaatggtaaagacagtgtacataaagtactacagtcattcagagatcaggggaagttcca ggatgtagtagatgggtatcatggcacactaatagaagtttttgattgtgagaaaactttttttacatgtgtagaggtca ccgctggtaacaggttatttcaccatattgtggattcagacaggacaggtactaaaatattaacggagatgaaccgtctg cgtctacccggtgaggtcacttttatgccgctcaaccgactggacagcagggaaacacagtatccagataccaatgatgc tataccaatgataagcaagcttaagtatgacaataagtatgtacgtgccataaaccatgtgtttggtaaaaccctcatct gtcgtaacatggagacagccacacagatcgccagaactcagaacctggattgtatcacacttgatggtgaccaggtgagc cgtagaggagccctgactggaggttactatgacacacggagatctcgacttgacctacagaaaggcaaggtagaactcag ccagaaactgtctgtacaggagagtgaatactctgaccataaacataaactggaagcactggaggggaagatcaacaacc ttgtcagtgagatgcagaaaatggagaccagaaacagcaaaaataaagacacatttgataagatgcgagcagatcttaga ttaatgacggaggagaagcaggctatagacaaatcccgatcacccaaggaaaagagtgtggccagtctacagtccagcct ggaggccatgcagagctcagcgtcctccctgaacgatgagctggggtcagatctgttatcacagctcagtgtggaggacc agaaagaagtggatcacctcagtgaccaaatcaaagtactcacacaacagaacaaggaggctctcacagaaagaatcagg ttagagggagaaaagaacaaatttgaaaatttactacacaacaatctaatgaagaagagagacagaattgcgaacgagct gcaagaagttacggcggaagatagacgtcaaaagctggaccaatatcagactgaacttgagtctgaggataacagggtta cagagatgaaaggcactcttaaagatttggataaacaactagaaaaaatgaacaaggagcagaaagaattgcaatcaagt ctagaaaactggagggcacaagaaaaggaatgtcaagacaagatcaatgatgatgccaaagatttggagaagatgactaa taaacagagtctcttactaaaaaagaaagatgaatgcatgaagaagataagagaactggggtcattaccaagtgatgcct ttgaaaagtatcagaatctcagtttaaaacagttgtttaagaagttagaaaattgcaaccaagaattaaagaagtacagt catgtcaacaagaaagctctagatcagtttgttaacttctctgatcaaaaggaaaaacttatcaaaagaaaagaggagtt agatagtgcacatgagtccatcttagatctgatgaataaccttgatcacaagaagtatgaagctatacaactcaccttca aacaggtatcaaagtatttcagtgagatcttcaagaatttggtaccacagggacatgccgtgttggtgatgaagaaaggc gacacggaccagcaggacgatgaggattcccaggacgtaccactcgtggagcagttcacaggagtcggtattaaggtgtc gtttaccggtaatcgagctgagatgagggacatgcagcagctgtcaggaggccagaaatccttggtggctctaacactta tatttgctatacagaagtgtgatcctgcacctttctacttgtttgatgagatagatcaggccttagactctcagcacaga aaagctgtagcagacatgattcatgagctagctggcaatgcacagttcatcaccactacgttcaggccagaattattaga gcatgccgataaattttatggagtcaagttcagaaataaggtcagtcatatagagtgtgtaagtaaggaagaggctgagg actttgtggaggacgacacgacacatggctga |
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Protein
| Protein ID | pfu_aug1.0_77.1_50601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_77.1_50601.t1 MIGKATLNGKDSVHKVLQSFRDQGKFQDVVDGYHGTLIEVFDCEKTFFTCVEVTAGNRLFHHIVDSDRTGTKILTEMNRL RLPGEVTFMPLNRLDSRETQYPDTNDAIPMISKLKYDNKYVRAINHVFGKTLICRNMETATQIARTQNLDCITLDGDQVS RRGALTGGYYDTRRSRLDLQKGKVELSQKLSVQESEYSDHKHKLEALEGKINNLVSEMQKMETRNSKNKDTFDKMRADLR LMTEEKQAIDKSRSPKEKSVASLQSSLEAMQSSASSLNDELGSDLLSQLSVEDQKEVDHLSDQIKVLTQQNKEALTERIR LEGEKNKFENLLHNNLMKKRDRIANELQEVTAEDRRQKLDQYQTELESEDNRVTEMKGTLKDLDKQLEKMNKEQKELQSS LENWRAQEKECQDKINDDAKDLEKMTNKQSLLLKKKDECMKKIRELGSLPSDAFEKYQNLSLKQLFKKLENCNQELKKYS HVNKKALDQFVNFSDQKEKLIKRKEELDSAHESILDLMNNLDHKKYEAIQLTFKQVSKYFSEIFKNLVPQGHAVLVMKKG DTDQQDDEDSQDVPLVEQFTGVGIKVSFTGNRAEMRDMQQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEIDQALDSQHR KAVADMIHELAGNAQFITTTFRPELLEHADKFYGVKFRNKVSHIECVSKEEAEDFVEDDTTHG |
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