Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7708.1_31434
Locus scaffold7708.1 : 16459 ... 22015 : -
To GenomeBrowser scaffold7708.1:16459..22015
Genes list of scaffold scaffold7708.1
Synonym pfu_aug2.0_71.1_03552

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7708.1_31434.t1 1 1 Ski_Sno 56 165 0.0 156.3 0.0 0.0 155.8

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_7708.1_31434.t1
Definition-
>pfu_aug1.0_7708.1_31434.t1
atgatgatggaatcaccacttcttcataaatctgacttgcgactttcaccacctcgggcccacaccagtcctggaccgac
ccccgggacaatcagcttgacccacgggatgattgctacagttaatcaccagaatagcttattgagcaaactgcataagg
cgtcgacgtatagcagtcccccaccggtggcatgcaaccccgacaacaatgtctgcaaagtcatcacctaccgtggggaa
aaggtggcagccttcaatgtggagggtcgggaactgatctgcctccctcaggcatttgaactttttctgaagcatcttgt
gggagggctgcatacagtctacaccaagctaaagagactggacatcacaccagtggtctgcaatgtcgaacaagtcagaa
ttctacgaggacttggagcaatacaacctggtgtcaacagatgtaagctgatcagctgtaaagaatttgacatcctctat
gaagactgcacaaattctaggtaa

Protein
Protein IDpfu_aug1.0_7708.1_31434.t1
Definition-
>pfu_aug1.0_7708.1_31434.t1
MMMESPLLHKSDLRLSPPRAHTSPGPTPGTISLTHGMIATVNHQNSLLSKLHKASTYSSPPPVACNPDNNVCKVITYRGE
KVAAFNVEGRELICLPQAFELFLKHLVGGLHTVYTKLKRLDITPVVCNVEQVRILRGLGAIQPGVNRCKLISCKEFDILY
EDCTNSR

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