Gene
| Gene Model ID | pfu_aug1.0_771.1_51066 |
|---|---|
| Locus | scaffold771.1 : 39816 ... 45582 : + |
| To GenomeBrowser | scaffold771.1:39816..45582 |
| Genes list of scaffold | scaffold771.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_771.1_51066.t1 | 1 | 1 | VWA | 2 | 156 | 4.3e-08 | 33.0 | 1.2e-11 | 6.1e-08 | 32.5 |
| pfu_aug1.0_771.1_51066.t1 | 3 | 1 | CBM_14 | 149 | 157 | 1.7e-19 | 69.4 | 0.27 | 1300.0 | -0.7 |
| pfu_aug1.0_771.1_51066.t1 | 3 | 2 | CBM_14 | 216 | 266 | 1.7e-19 | 69.4 | 2.0e-11 | 9.9e-08 | 31.7 |
| pfu_aug1.0_771.1_51066.t1 | 3 | 3 | CBM_14 | 272 | 322 | 1.7e-19 | 69.4 | 4.8e-15 | 2.4e-11 | 43.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_771.1_51066.t1 | gi|321463460|gb|EFX74476.1| | hypothetical protein DAPPUDRAFT_324339 [Daphnia pulex] | 1.0e-12 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_771.1_51066.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_771.1_51066.t1 atggaaaaatgtgttcacggaatagtaaactatttggaaatatcagaaaactctttcaatgtgggatttatgttgtatgg ccgctctccaaagtccatgagcgagattagaccgtttagaaatagaactcaaataaacacacggttatccctcttgtccc agcaaggtgacttatcgtggatcctcacaggaagtcccagtctcccgttagctttaattgaactcagaaatatgttcaag agagctgagctagagaggatagacgcagacaaaaataaaactatccaaaacatagccatcctaatccttaatggaacgga gaagtaccaaggggaatggcgaattctacagctagctgaggaggcaaaacaaatgggaattattatatatacagttacca tgggaacagacaacggaaacattcgattggccagacagatagcgtctgatgattgcaaaagttattttgttcgagaaggg aatatttcggggccgtttagattagaagaagtattaaaggacctcggcaataacatttgctcagctacagatccaaatat gacacatcttgccggtccagatctgctgaaaaactgttattcagtgaggacgtttgacccgccatcggtcgtacctctaa ttgactgtcactcccatgatagcgtccatcctgatgataataactgtgcttacttcttcaaatgtgaagatggtaaggcc aaccatcttagatgtaggctggataatttatttgacccactttcctcgacctgcaaccacaaagaggctgtcacgtgcta ttcacaggtcacgtgcccggaaccaactggcttatttccatatccgggatcttgtactaaatatttgaactgttttaatg gcctgacgtacattcagacgtgtccctatgctctacattttgatcctacatataaacgttgtgtcagacctaagtatagt gattgtcctcacagtaatgtaaaaattcctatttatcatcaaacgttctttagataa |
|
Protein
| Protein ID | pfu_aug1.0_771.1_51066.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_771.1_51066.t1 MEKCVHGIVNYLEISENSFNVGFMLYGRSPKSMSEIRPFRNRTQINTRLSLLSQQGDLSWILTGSPSLPLALIELRNMFK RAELERIDADKNKTIQNIAILILNGTEKYQGEWRILQLAEEAKQMGIIIYTVTMGTDNGNIRLARQIASDDCKSYFVREG NISGPFRLEEVLKDLGNNICSATDPNMTHLAGPDLLKNCYSVRTFDPPSVVPLIDCHSHDSVHPDDNNCAYFFKCEDGKA NHLRCRLDNLFDPLSSTCNHKEAVTCYSQVTCPEPTGLFPYPGSCTKYLNCFNGLTYIQTCPYALHFDPTYKRCVRPKYS DCPHSNVKIPIYHQTFFR |
|