Gene
| Gene Model ID | pfu_aug1.0_7719.1_09621 |
|---|---|
| Locus | scaffold7719.1 : 48042 ... 61745 : - |
| To GenomeBrowser | scaffold7719.1:48042..61745 |
| Genes list of scaffold | scaffold7719.1 |
| Synonym | pfu_aug2.0_1955.1_18611 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | tubulin beta chain-like |
| Description | high homology to gene in Anolis carolinensis |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Misat_Tub_SegII | 2 | 71 | 6.7e-06 | 26.1 | 4.4e-09 | 1.6e-05 | 24.8 |
| pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Tubulin | 3 | 222 | 0.0 | 234.7 | 0.0 | 0.0 | 234.1 |
| pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Tubulin_C | 261 | 382 | 0.0 | 170.7 | 0.0 | 0.0 | 170.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7719.1_09621.t1 | gi|327290154|ref|XP_003229789.1| | PREDICTED: tubulin beta-4B chain [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 3 |
| 8-16cell | 3 |
| egg-Dshape | 1 |
| trochophore | 8 |
| >Adult tissues | |
| Dshape | 8 |
| adductorMuscle | 2 |
| maleGonad | 6 |
| mantle | 5 |
| mantleEdge | 1 |
| mantlePallium | 4 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_7719.1_09621.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7719.1_09621.t1 atgagagaaatagtacatttacaggccgggcaatgtggaaaccaaattggtgctaaattctgggaggtgatctcagacga gcatggtattgatcccaccggcacgtaccatggagattcagacctacagttagagaggatcaatgtctactataacgaag ccacaggcgggaagtatgtcccccgtgccgttttggtggaccttgaaccagggaccatggactctgtcaggtctggacct tttggacaggtcttcagacccgacaatttcgtgtttggtcagagcggtgcagggaacaactgggcaaagggccactacac agagggtgccgaacttgttgactccgtattagacgtagttaggaaggagtctgagagctgtgattgtctacaaggcttcc agctgactcactcactaggtggcggcaccggctcaggcatgggaacactactcatctccaaaatccgtgaagaataccca gacagaatcatgaacacattctccgtagtaccatcacctaaagtatcagacacagtagttgaaccatacaatgccacttt atctgtacatcagcttgtagaaaacaccgatgagacatattgtattgacaatgaagctctttacgacatctgtttccgta cccttaaactgaccacaccaacctacggagatctcaatcatcttgtgtcggcaaccatgtctggtgttaccacatgcctt aggttccctggtcagcttaacgctgatttacgtaaactggctgtcaacatggtacccttcccacgtctccatttcttcat gcctgggttcgctcccctcacatcacgcggcagtcagcagtacagagctcttaccgtccctgagctcacccagcaaatgt ttgatgccaagaacatgatggcggcttgcgatcctcgtcacggacgatacttgactgtggctgccatcttcaggggccgc atgtccatgaaggaagttgatgaacagatgttgaacgtgcagaacaagaacagcagctactttgtcgaatggattcccaa caacgtcaaaactgccgtctgcgacatcccaccacgaggtctcaagatgtccgctacattcatcggcaacagcacagcta tccaggagctgttcaagcgtatttctgagcagttcaccgctatgttccgtcgtaaggctttcttacattggtacactggt gagggtatggacgagatggagtttactgaggctgaatccaacatgaacgacttggtgtcagagtaccaacaataccagga tgctactgccgacgaggagggagagttcgaggaggaggaagaaccagaggaagcttag |
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Protein
| Protein ID | pfu_aug1.0_7719.1_09621.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7719.1_09621.t1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGP FGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFEEEEEPEEA |
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