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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7721.1_45719
Locus scaffold7721.1 : 1 ... 2895 : -
To GenomeBrowser scaffold7721.1:1..2895
Genes list of scaffold scaffold7721.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_7721.1_45719.t1 1 1 Xpo1 41 122 1.9e-14 53.7 3.3e-18 2.5e-14 53.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_7721.1_45719.t1 gi|260801100|ref|XP_002595434.1| hypothetical protein BRAFLDRAFT_69266 [Branchiostoma floridae] 3.0e-38

Transcript
Transcript IDpfu_aug1.0_7721.1_45719.t1
Definition-
>pfu_aug1.0_7721.1_45719.t1
atgcatgtttttttcatccagaatttgataaacagacagtggttaggattccctagtcaggataaactggaaattagatc
tactctgaaccgcttcctgttggagcaccacgatcatgtaccgtcctatatacgtaacaaactggtcaagcttgtggtgg
acattggtcgtatcgactggccacatttctatccagacttcttctcaagtattctacagttatccagtcagagtgaaaca
gtaatcctggggatcctcctgttacacacagcttcagaagagttagctgctcctcgtgaggacctcagcatggctcgcaa
agaggagctacagagactgctcctaactcaagtccccagtgtactca

Protein
Protein IDpfu_aug1.0_7721.1_45719.t1
Definition-
>pfu_aug1.0_7721.1_45719.t1
MHVFFIQNLINRQWLGFPSQDKLEIRSTLNRFLLEHHDHVPSYIRNKLVKLVVDIGRIDWPHFYPDFFSSILQLSSQSET
VILGILLLHTASEELAAPREDLSMARKEELQRLLLTQVPSVL

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