Gene
| Gene Model ID | pfu_aug1.0_782.1_58243 |
|---|---|
| Locus | scaffold782.1 : 21497 ... 34325 : - |
| To GenomeBrowser | scaffold782.1:21497..34325 |
| Genes list of scaffold | scaffold782.1 |
| Synonym | pfu_aug2.0_51.1_03508 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_782.1_58243.t1 | 2 | 1 | SNAP | 6 | 96 | 0.0 | 280.5 | 1.7e-33 | 3.5e-30 | 105.1 |
| pfu_aug1.0_782.1_58243.t1 | 2 | 2 | SNAP | 99 | 227 | 0.0 | 280.5 | 0.0 | 0.0 | 183.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_782.1_58243.t1 | gi|291413344|ref|XP_002722917.1| | PREDICTED: alpha-soluble NSF attachment protein [Oryctolagus cuniculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_782.1_58243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_782.1_58243.t1 atggcagacaatgatcaaaaaggaaaagaactatttgctgaagcagagaaaaaactaaaatcatcacaaggattcttcag ctcgttgtttggatcatcctcgaaagttgaagatgcttcagagttatttgttagagcaggaaatatgttcaagatggcaa agaattggacaagtgctggtgagtcattctgtagagcagcccagctacagatagaattgaagagcaagcaccaggcagct acagaatatgttaatgccggcacatgttacaagaagtcagatcctaatggtttttcagcaaataaatgtctggtgaaagt tgcacagtactcggctcaactggaacaatatgacaaagcaatacagatttacgaagagattggtacatcctgtgttgata attcactattgaagtatagtgccaaagattacttcttcaaggcagcactgtgtcatctctgtgtggatgtgcttaatgct gaacatgccgtgcagaaatatgaagaaatcatgccggcttttggtgacaacagagagagtaaactactcaagaaattgat agaggctgtaaatgaagaagacatagataaatacactgatgctgttaaagaatacgacagtatttcccgattagaccaat ggactactaccgtattactccgagtgaagaagaacattaatgccgaggatttacgatga |
|
Protein
| Protein ID | pfu_aug1.0_782.1_58243.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_782.1_58243.t1 MADNDQKGKELFAEAEKKLKSSQGFFSSLFGSSSKVEDASELFVRAGNMFKMAKNWTSAGESFCRAAQLQIELKSKHQAA TEYVNAGTCYKKSDPNGFSANKCLVKVAQYSAQLEQYDKAIQIYEEIGTSCVDNSLLKYSAKDYFFKAALCHLCVDVLNA EHAVQKYEEIMPAFGDNRESKLLKKLIEAVNEEDIDKYTDAVKEYDSISRLDQWTTTVLLRVKKNINAEDLR |
|