Gene
| Gene Model ID | pfu_aug1.0_78628.1_49214 |
|---|---|
| Locus | scaffold78628.1 : 1 ... 3486 : + |
| To GenomeBrowser | scaffold78628.1:1..3486 |
| Genes list of scaffold | scaffold78628.1 |
| Synonym | pfu_aug2.0_2209.1_32095 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_78628.1_49214.t1 | 2 | 1 | PDZ_2 | 60 | 78 | 5.9e-08 | 32.4 | 0.48 | 1200.0 | -0.6 |
| pfu_aug1.0_78628.1_49214.t1 | 1 | 1 | PDZ | 93 | 161 | 5.0e-16 | 58.6 | 7.0e-19 | 1.7e-15 | 56.9 |
| pfu_aug1.0_78628.1_49214.t1 | 2 | 2 | PDZ_2 | 102 | 150 | 5.9e-08 | 32.4 | 1.1e-10 | 2.7e-07 | 30.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_78628.1_49214.t1 | gi|241407181|ref|XP_002409814.1| | PDZ domain-containing protein, putative [Ixodes scapularis] | 4.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_78628.1_49214.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_78628.1_49214.t1 tccgagccaccaagtgaaccatcagaacctgaacccccgagagagccatcaccagaacctgagcctgagcgtgaaccaga gcccgaacctgagccagaaccagcaaaggaagaagagcgtcttcctgagccagaaccggaacaagtgagcactcaggaag atacaccggcagttgaagaaattgtagtaaatgccaatggagttaatgtagaagaagatgatgaatcaagccggtatatt cctcgattgtgtcatgttacaaagtggccagattttcaaggctacggtttcaatttacatgctgagagagacaaaccagg acaatatattggtaatattgattcagactctccggctgaagaagctgggttaaggaaaggagataggattatagaaatta atggtgtaaatattgaaaatgaatcgcaccaacaggtgatacagagggtgaaagcggttccaaatgagacgaccatgctt ttattggatgacgcagccgacaaatattacaaagataaaggaatcacggtcaatagcagcatgcctaatgtgatgaaatt ggaaaataagcccagag |
|
Protein
| Protein ID | pfu_aug1.0_78628.1_49214.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_78628.1_49214.t1 SEPPSEPSEPEPPREPSPEPEPEREPEPEPEPEPAKEEERLPEPEPEQVSTQEDTPAVEEIVVNANGVNVEEDDESSRYI PRLCHVTKWPDFQGYGFNLHAERDKPGQYIGNIDSDSPAEEAGLRKGDRIIEINGVNIENESHQQVIQRVKAVPNETTML LLDDAADKYYKDKGITVNSSMPNVMKLENKPR |
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