Gene
| Gene Model ID | pfu_aug1.0_7867.1_67759 |
|---|---|
| Locus | scaffold7867.1 : 21464 ... 31595 : - |
| To GenomeBrowser | scaffold7867.1:21464..31595 |
| Genes list of scaffold | scaffold7867.1 |
| Synonym | pfu_aug2.0_137.1_23546 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7867.1_67759.t1 | 3 | 1 | RRM_1 | 96 | 161 | 4.2039e-45 | 151.4 | 6.0e-18 | 1.8e-14 | 53.1 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 1 | RRM_6 | 96 | 159 | 1.1e-32 | 111.8 | 2.5e-12 | 7.5e-09 | 35.4 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 1 | RRM_5 | 110 | 171 | 4.4e-22 | 77.6 | 5.0e-11 | 1.5e-07 | 31.1 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 2 | RRM_1 | 177 | 240 | 4.2039e-45 | 151.4 | 1.0e-12 | 3.0e-09 | 36.3 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 2 | RRM_6 | 177 | 239 | 1.1e-32 | 111.8 | 1.4e-11 | 4.1e-08 | 33.0 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 2 | RRM_5 | 216 | 240 | 4.4e-22 | 77.6 | 1.6e-06 | 0.0047 | 16.7 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 3 | RRM_1 | 273 | 333 | 4.2039e-45 | 151.4 | 5.4e-20 | 1.6e-16 | 59.6 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 3 | RRM_6 | 273 | 330 | 1.1e-32 | 111.8 | 1.1e-13 | 3.3e-10 | 39.7 |
| pfu_aug1.0_7867.1_67759.t1 | 3 | 3 | RRM_5 | 288 | 337 | 4.4e-22 | 77.6 | 1.6e-09 | 4.8e-06 | 26.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7867.1_67759.t1 | gi|144952800|gb|ABP04054.1| | RNA-binding protein [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_7867.1_67759.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7867.1_67759.t1 atggcacagaatggaataatggagcaagtgaaaacagaaattaaaacagaagaagacatggaaacgaacggccaaacaga ggactttcaaaaattgacagaatatggaattaatattaaagttgcaaatgaacttgtcaaaatttatgaatcgggtatgt caaaatttatgaatcgggagattttggacagaaccggttactcactagatgtgacaacgggacagagaaagtatggtggt ccacccccgggagaagatgagagaaatgcaccatcaggatcagaggtcttctgtggaaaaattcccaaagatgtctttga agacgaactgatacctttgtttgaaaaatgtggaaagatatgggacttgcggcttatgatggaccccatgacaggcttca ataggggctattgttttatcacattttgtgacaagcctggtgcattagaagctgtgaaacagcttgacaactatcaaatc aaacctggaaagtccattaaagtgaacatctctgtagcaaaccaaaggttgtttgttggaaacatccctaagagcaaatc taaagatgagattatggaagaattttctaaaaagacagaggatttgactgatgtcataatatacagatctgccgagaaag agaatcagaaaaatcgtggatttgccttcctggagtacgagtctcacaaagctgcttccactgccaaacgcaagttgtcc tctggtaggaccaaagtttggggttgtgatgtaatcgtagattgggccgatcccatcgacgatcccgacagcgacacaat gtcaaaggtcaaagttctgtatgtgaggaatctgacatcggatgtgactgaagacacattaaaggaaaagtttggtgaat atggtaaagtggaacgtgtcaagaaaataaaagactatggattcatacattttgaagaaagggatgatgcagtgaaagcc atggagggaatgaatggacagaaactaggcaagttagaaatggaagtatcactcgccaaacctccatcagagaacaagaa aaaagaacagaggaaacgtgaccaggagcgtcgtcaaatgatgatggcaatgggaatgggaggtcccagatatgggtatg atgactactatgggccacctatgatgagaggaggtggtatgccacctatgagaggtggaggaggaggaggtggaatgagg ccccggatgccaccaccacctgatttctacgacgactattatggctatgatgactttgactactacggtggatatgctcc ccctataccacgaggcagaggaggtcgcatgcccccaccaccaatgcgaggtcgaggaggggcgcccccaccacttcgtg gtggtcctagaggtggtgctgtagccagaggatcaagaggagccatgcggggagcgaggggtgctgccgtcaggggtcga gggatgcctgcagggggtaatgtatctaaatctcctgcagcaatgcaacgcggtggtaaaaggaaagcaggcggagatat gaatcaaacaaactctaaaaaacgtaatatgtcagacaattggggagcgcaacccatcgcccaacaacctcttgatcaat cggggtatggtggtggaggaggatataatgattcacaatggtaccaagattcatttgggcaaaattggggttaa |
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Protein
| Protein ID | pfu_aug1.0_7867.1_67759.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7867.1_67759.t1 MAQNGIMEQVKTEIKTEEDMETNGQTEDFQKLTEYGINIKVANELVKIYESGMSKFMNREILDRTGYSLDVTTGQRKYGG PPPGEDERNAPSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALEAVKQLDNYQI KPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLS SGRTKVWGCDVIVDWADPIDDPDSDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERVKKIKDYGFIHFEERDDAVKA MEGMNGQKLGKLEMEVSLAKPPSENKKKEQRKRDQERRQMMMAMGMGGPRYGYDDYYGPPMMRGGGMPPMRGGGGGGGMR PRMPPPPDFYDDYYGYDDFDYYGGYAPPIPRGRGGRMPPPPMRGRGGAPPPLRGGPRGGAVARGSRGAMRGARGAAVRGR GMPAGGNVSKSPAAMQRGGKRKAGGDMNQTNSKKRNMSDNWGAQPIAQQPLDQSGYGGGGGYNDSQWYQDSFGQNWG |
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