Gene
| Gene Model ID | pfu_aug1.0_7893.1_38660 |
|---|---|
| Locus | scaffold7893.1 : 20516 ... 22301 : + |
| To GenomeBrowser | scaffold7893.1:20516..22301 |
| Genes list of scaffold | scaffold7893.1 |
| Synonym | pfu_aug2.0_2581.1_05587 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-NSCL |
| Description | Best hit to NP_005589 helix-loop-helix protein 1 [Homo sapiens] with 9e-31 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7893.1_38660.t1 | 3 | 1 | HLH | 22 | 29 | 3.1e-17 | 62.0 | 0.43 | 6400.0 | -3.1 |
| pfu_aug1.0_7893.1_38660.t1 | 3 | 2 | HLH | 65 | 71 | 3.1e-17 | 62.0 | 0.11 | 1700.0 | -1.2 |
| pfu_aug1.0_7893.1_38660.t1 | 3 | 3 | HLH | 77 | 128 | 3.1e-17 | 62.0 | 2.1e-21 | 3.1e-17 | 62.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7893.1_38660.t1 | gi|345491490|ref|XP_001605861.2| | 2.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_7893.1_38660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7893.1_38660.t1 atgaaaggagcaattgagccacatgaaaacctgtacttctacccgattttctctggaatcatgcaccctataagggaaag cgtccgagataggatggtgaactacgattctgacgatttcccatattccaacaatcaaaatgaaggaccaatacgaaaag gcgggaatcaagacaattctataagtagagaggaaagaaggcgacggagacgtgcaactccaaaataccgcactgcgcat gctacaagggaacggttccgggtggaggcattcaaccaagcttttggagaattgaggaaactattaccgattcttcctcc agataagaaactttccaaaatcgaaattctacggctggctatttgttatatcgcacaccttagaaatgttctggaacttt attga |
|
Protein
| Protein ID | pfu_aug1.0_7893.1_38660.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7893.1_38660.t1 MKGAIEPHENLYFYPIFSGIMHPIRESVRDRMVNYDSDDFPYSNNQNEGPIRKGGNQDNSISREERRRRRRATPKYRTAH ATRERFRVEAFNQAFGELRKLLPILPPDKKLSKIEILRLAICYIAHLRNVLELY |
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