Gene
| Gene Model ID | pfu_aug1.0_790.1_51081 |
|---|---|
| Locus | scaffold790.1 : 50966 ... 65555 : - |
| To GenomeBrowser | scaffold790.1:50966..65555 |
| Genes list of scaffold | scaffold790.1 |
| Synonym | pfu_aug2.0_51.1_03514 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Pinctada fucata bone morphogenetic protein-2 |
| Description | NCBI BlastP search "AB176952.2" |
| mRNA evidence |
| Study field | other developmental genes |
|---|---|
| Gene name | dpp-bmp2/4 |
| Description | NCBI BLASTP hit to dbj|BAG68618.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_790.1_51081.t1 | 1 | 1 | TGFb_propeptide | 50 | 287 | 0.0 | 230.5 | 0.0 | 0.0 | 229.9 |
| pfu_aug1.0_790.1_51081.t1 | 1 | 1 | TGF_beta | 344 | 447 | 6.7e-40 | 135.6 | 3.19496e-43 | 1.6e-39 | 134.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_790.1_51081.t1 | gi|46518286|dbj|BAD16731.1| | bone morphogenetic protein-2 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_790.1_51081.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_790.1_51081.t1 atgatttacggatttggacattacctggtgctagcgtcgtgcctgctggcttgtggacattcttcaattacgtcacaacc ggaagtgaaagtagatgaatctcgaccccaatcagaagatcaagctgaaaatatttttcctccaaatgttgacgaaaaac aaaaacaagacattatcaaagcatttgaagctagtttattgggagtatttggattgaaagaacgtccaaaacctaacaaa gacttaaaaattcctcagtacttattagacttgtataagaaacacagcgatgacccagattcactttccgaaagtttgtc agtgaagagacgtggggtgggatcagcaaatactgttagaagctttttccataaagaatctcgggagggcgtcgtgcaaa tgagcgaatgttcaaacgaaaactgtgcccaattcttgtttaatgttacctcaatacctcaggatgaagtgctgacaggc gcggagctacgagtatatgttgacagagacaacacttctagtgctaacgattctaattttcaaatgagaaagcagtttcg tcatagaatagaaattcatgaagtgatgatgccctcaaaaaatggcggcgaagccataacgaggctactggacacgagat atgtacagtcacgaaacgcctcctcgtggcacgcttttgatatccatcccgcagtattaaagtggaaaaagacacctcaa tataatcatggtttacaaatacgagtattaccgtataaaagcaaaccgtcctcacattctgtgaaacacgtgcgattacg tagatctacggaattatccgaaaacgagtggcatactcaaagaccattattagtgacttatacagacgacaatcgcggtc gaagaactaaaagacaaacaaaaaacgataaagacgataaaagaagaaatagaaaaaggaggaggcggaggaaaaataga cgacgaaaaaataagaggaaaaataagaagaatagaaaaaataataaaacaaaaagaaagaagtacaccgatgcgtgtaa aagaaaaccattatatgttgacttcaaagcagtggggtggaatgactggatttttgcacctcctggatacgaagcttatt attgtcatgggtcatgtaactggccgtatgacgatcatatgaacgtcacaaaccatgcaatagtgcaggacttagtgaat tctataaacccagggtcagtacccaaaccttgctgtgtacccacagaacttagctctctttcattgttatataccgacga acatgaagttgtcgtcttaaaagtttatcccgatatggttgttgaaggatgcggatgtcggtag |
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Protein
| Protein ID | pfu_aug1.0_790.1_51081.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_790.1_51081.t1 MIYGFGHYLVLASCLLACGHSSITSQPEVKVDESRPQSEDQAENIFPPNVDEKQKQDIIKAFEASLLGVFGLKERPKPNK DLKIPQYLLDLYKKHSDDPDSLSESLSVKRRGVGSANTVRSFFHKESREGVVQMSECSNENCAQFLFNVTSIPQDEVLTG AELRVYVDRDNTSSANDSNFQMRKQFRHRIEIHEVMMPSKNGGEAITRLLDTRYVQSRNASSWHAFDIHPAVLKWKKTPQ YNHGLQIRVLPYKSKPSSHSVKHVRLRRSTELSENEWHTQRPLLVTYTDDNRGRRTKRQTKNDKDDKRRNRKRRRRRKNR RRKNKRKNKKNRKNNKTKRKKYTDACKRKPLYVDFKAVGWNDWIFAPPGYEAYYCHGSCNWPYDDHMNVTNHAIVQDLVN SINPGSVPKPCCVPTELSSLSLLYTDEHEVVVLKVYPDMVVEGCGCR |
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