Gene
| Gene Model ID | pfu_aug1.0_791.1_43828 |
|---|---|
| Locus | scaffold791.1 : 21436 ... 46501 : + |
| To GenomeBrowser | scaffold791.1:21436..46501 |
| Genes list of scaffold | scaffold791.1 |
| Synonym | pfu_aug2.0_2595.1_18872 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_791.1_43828.t1 | 3 | 1 | DNA_pol_phi | 38 | 123 | 4.8e-22 | 77.5 | 0.0023 | 35.0 | 1.9 |
| pfu_aug1.0_791.1_43828.t1 | 3 | 2 | DNA_pol_phi | 277 | 317 | 4.8e-22 | 77.5 | 0.011 | 170.0 | -0.3 |
| pfu_aug1.0_791.1_43828.t1 | 3 | 3 | DNA_pol_phi | 434 | 584 | 4.8e-22 | 77.5 | 3.2e-26 | 4.8e-22 | 77.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_791.1_43828.t1 | gi|260801974|ref|XP_002595869.1| | hypothetical protein BRAFLDRAFT_84237 [Branchiostoma floridae] | 4.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_791.1_43828.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_791.1_43828.t1 atgtcacaaggcaaattaaacatcgagaaaagcattttagaacaattttgggtacttgcagaatcaaatgaacaaggaat tttgtcatccaccgaaaaacttacaaagcaacttgcaaacaaacaagagaacttacagattttgcgaaatttcagcactg tgacagtggactccgttttacaggcagtggctatgcaattgaaatatacacagaaagagtctaagtctaatcaggagtca cagcttcaaaaagtgaccaaacatttgttggaaatcaaaaagaagaaatcctatcttcaacagatttgcacaaatgctgt tgctttagcgatcagtcaggaaactgtcaataagaaattcctgaaacagtactggcattgctcgaagctgatatctaacg acaattttgaaagactgtggaaaatcataatgcaaactgcggtccatccagtacgacacatggttgtagaccagattgtt gatggaatcctagagatgccctcttctgtatcagatttctggagctgtggacttgatctaacgtttgggaaagccccttc aagtgcagctctcggacttcatgtgttactgaaaattcttccttgtgttcaaagtgttgatcaggtgaatagcatactag tgccatccgtttttgatacgttgacaaaagccgtagacagcaagaagaaaagcagtcatccgttacatactgtggcaaaa gaaacgattgaggcacttacactgacaataaagcagtttacagatggagatttgcagctggctgtattgaaatgtttaga ggcttcctctctcagaatggggaaggaaatgaacgtcatcaaagattccgtactcagttctttgaaacctgatgctgtca agacacattcacaacatctactcaaagtatttcacaagctcaacaagcaaaatgaggatgaagaaaatgatgccaaaatc ttcatggttatcaccgatatacgcaccctcgtcagtttacagtccatgatcggagagaatgattggcagatccatttgtt gaagttcttggccgtacactcctactggaacgttacaaagaaaaccgctgatcttgcccattgtgaaaaggaaacaaaga ctctaagtacggcagtaagaaaactgttccaggacagcttctttagaactcttgataatctactacttcataaaggagag agatcaaagtcaacagcattgaatgattacatagataatatatatcaactctgtatgtacatgaaggttttaaatcagtg ggacagctctttaagtgtgatagcttccatcaaagaaaagctgaaaccagaagagagttcaggcattcaccagtgtctgg cgttacttatcctatatcactgtgttcagttgctggtacaaccaagaaatcacttgtctgttttagaggatctgaaagtc tgtcatgaaaaaataactaaggcgaaaggtcgtaagagttcaaaagaagaacctaaatggatagaggtgataatggaagt tttattgagtatgatgtcacagggctcgaacctggccagagtgacggctaaagcagcatttggacttacatgtgaacata ctacgcctgactcacttaagttcatcacagaggttcttgatgctgaaaagctaggaggtgatgatgagggtcccatagca tttgaagatgatcaagacatggaagatgatgatgatgaggaagactttgaagatgtcgaagaagatgaaaatacttgtgg aaatgaaaaatgtgaggctgctactgaacctagagatggagagtgcagagccatcacccgtaaaaacccggtcacagagg gttcatactga |
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Protein
| Protein ID | pfu_aug1.0_791.1_43828.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_791.1_43828.t1 MSQGKLNIEKSILEQFWVLAESNEQGILSSTEKLTKQLANKQENLQILRNFSTVTVDSVLQAVAMQLKYTQKESKSNQES QLQKVTKHLLEIKKKKSYLQQICTNAVALAISQETVNKKFLKQYWHCSKLISNDNFERLWKIIMQTAVHPVRHMVVDQIV DGILEMPSSVSDFWSCGLDLTFGKAPSSAALGLHVLLKILPCVQSVDQVNSILVPSVFDTLTKAVDSKKKSSHPLHTVAK ETIEALTLTIKQFTDGDLQLAVLKCLEASSLRMGKEMNVIKDSVLSSLKPDAVKTHSQHLLKVFHKLNKQNEDEENDAKI FMVITDIRTLVSLQSMIGENDWQIHLLKFLAVHSYWNVTKKTADLAHCEKETKTLSTAVRKLFQDSFFRTLDNLLLHKGE RSKSTALNDYIDNIYQLCMYMKVLNQWDSSLSVIASIKEKLKPEESSGIHQCLALLILYHCVQLLVQPRNHLSVLEDLKV CHEKITKAKGRKSSKEEPKWIEVIMEVLLSMMSQGSNLARVTAKAAFGLTCEHTTPDSLKFITEVLDAEKLGGDDEGPIA FEDDQDMEDDDDEEDFEDVEEDENTCGNEKCEAATEPRDGECRAITRKNPVTEGSY |
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