Gene
| Gene Model ID | pfu_aug1.0_7928.1_53057 |
|---|---|
| Locus | scaffold7928.1 : 31566 ... 35661 : + |
| To GenomeBrowser | scaffold7928.1:31566..35661 |
| Genes list of scaffold | scaffold7928.1 |
| Synonym | pfu_aug2.0_421.1_04154 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7928.1_53057.t1 | 1 | 1 | TMEM101 | 23 | 140 | 1.2e-29 | 103.4 | 3.9e-33 | 1.5e-29 | 103.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7928.1_53057.t1 | gi|260814862|ref|XP_002602132.1| | hypothetical protein BRAFLDRAFT_234285 [Branchiostoma floridae] | 2.0e-14 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_7928.1_53057.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7928.1_53057.t1 atgtcagttcaccaagcaggatgtgcggccatgtttattctcctgtcatctctacacgatccaaagcagtcaaaacactt acggaaaatagcagagacacttactggcttctttttgatagcctacacttacatgctcaataatagccctgaagatagac gtgcacttttagcgcatattccgggagatgactggagtcgatatgtcgtcaccctgattctcgcggcaggtgcggtgtgc ttcttctctggacactttctccgggatatatcgatttcgttagttgtggtttttgcaatattgaccctgtttgttgattg tgacattgactattgggtaaaaagtaagcatatgcacatatggaatcaaataagaataataattgacaatatttgtatta taattggactcagtgtcgtaattatgaaatttggaaacaaggtgaagatggaataa |
|
Protein
| Protein ID | pfu_aug1.0_7928.1_53057.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7928.1_53057.t1 MSVHQAGCAAMFILLSSLHDPKQSKHLRKIAETLTGFFLIAYTYMLNNSPEDRRALLAHIPGDDWSRYVVTLILAAGAVC FFSGHFLRDISISLVVVFAILTLFVDCDIDYWVKSKHMHIWNQIRIIIDNICIIIGLSVVIMKFGNKVKME |
|