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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_7953.1_31494
Locus scaffold7953.1 : 316 ... 4959 : +
To GenomeBrowser scaffold7953.1:316..4959
Genes list of scaffold scaffold7953.1
Synonym pfu_aug2.0_1214.1_14877

Manual annotation
Study fieldEnvironmental Response
Gene namelong wavelength rhodopsin
DescriptionBLASTP top hit to ACA13926.1 [Apterostigma manni].
mRNA evidence

Transcript
Transcript IDpfu_aug1.0_7953.1_31494.t1
Definition-
>pfu_aug1.0_7953.1_31494.t1
atgaatgaatatggcaactccagtgaacaaataacatcttccgacgtttttcacctgaggccaagagattttaaagctgc
agttgtggttacagttattggtattgtttctgtgattggtaatgcactcataattggcctttacataaagaacaaggaac
tgagagacaaaacaaccaagtttatcataaatctaggattaacagactttcttcttggtttaatgttgtgtgtcggtgtt
ttcttggagtatgctggtactgcaaaggaatcgtttgtccagtgcatgggaaaagatttagctttagcttctgacatcaa
cttcacttacagatacatacacgatgtgttgtccatcaataatcaaaaattcgcggattacctcagcagatcatgtccct
cggggcttgaaatcaaagaaactacagagaaaaataagtcatcatcctatttggacataatgttgtactacgacactgat
ggtcacatgaacacctcactctatgacaaacaagacgacttcaatttcagtatcacaagcgtttcttttctgagtagcaa
cattccttcatcgcctgcttatggcgttttcatatctcaattgatacgctttgccagagtaagtaccaaatatacagatt
ttattctgagagctaggcgtctttcagataagcttctcgctcagggatacgtttgtgaccaactaacatcgtcactgagg
aagttctacggtcgatatggggaccttgccatgcactatgatgtcacactctccagaatggtggatgatattctgtcata
g

Protein
Protein IDpfu_aug1.0_7953.1_31494.t1
Definition-
>pfu_aug1.0_7953.1_31494.t1
MNEYGNSSEQITSSDVFHLRPRDFKAAVVVTVIGIVSVIGNALIIGLYIKNKELRDKTTKFIINLGLTDFLLGLMLCVGV
FLEYAGTAKESFVQCMGKDLALASDINFTYRYIHDVLSINNQKFADYLSRSCPSGLEIKETTEKNKSSSYLDIMLYYDTD
GHMNTSLYDKQDDFNFSITSVSFLSSNIPSSPAYGVFISQLIRFARVSTKYTDFILRARRLSDKLLAQGYVCDQLTSSLR
KFYGRYGDLAMHYDVTLSRMVDDILS

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