Gene
| Gene Model ID | pfu_aug1.0_7993.1_53073 |
|---|---|
| Locus | scaffold7993.1 : 27126 ... 33927 : + |
| To GenomeBrowser | scaffold7993.1:27126..33927 |
| Genes list of scaffold | scaffold7993.1 |
| Synonym | pfu_aug2.0_439.1_30768 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | G-protein-coupled 5-hydroxytryptamine receptor |
| Description | blastp top hit to AAC28786 [Aplysia californica], partial CDS |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-5-HT1-like |
| Description | Renamed after the nomenclature proposed by Tierney, AJ (2001). Reciprocal BLASTP best hit to NCBI Accession AAC28786 (Aplysia californica). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_7993.1_53073.t1 | 2 | 1 | 7tm_1 | 75 | 92 | 0.0 | 269.8 | 0.25 | 1800.0 | -2.3 |
| pfu_aug1.0_7993.1_53073.t1 | 2 | 1 | 7TM_GPCR_Srsx | 94 | 267 | 3.9e-07 | 29.5 | 3.3e-10 | 2.4e-06 | 26.8 |
| pfu_aug1.0_7993.1_53073.t1 | 2 | 2 | 7tm_1 | 99 | 447 | 0.0 | 269.8 | 0.0 | 0.0 | 269.8 |
| pfu_aug1.0_7993.1_53073.t1 | 2 | 2 | 7TM_GPCR_Srsx | 384 | 462 | 3.9e-07 | 29.5 | 0.0086 | 64.0 | 2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_7993.1_53073.t1 | gi|325297088|ref|NP_001191550.1| | G-protein-coupled 5-hydroxytryptamine receptor [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_7993.1_53073.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7993.1_53073.t1 atgttgtgggattctctgacttcatcgaacgagtccaaggttactggtgctaggagcttccttaagttcgatataggaaa cagttttaagcaccgtgagtatcagaacgaatcatatgaaaacatgacgctgttacaggcaggaactgttttgaatgaga gcgcagtgggctctaccgaaagcatccagaatataagtgccatcatagcttttgaatacgtaccaaggtacagtatagaa ataatgatcgtgctgtgtgtcgtattaagttgcatgatagttgcgactatcatagggaacgtttttgtgatttccgccat cattttggaaagaagtctccaaggagtttcaaattacttgattctgtcgttggctgtcacggacttaatggtggccgttt tggtcatgccaatatccgtaattgaccaggtaagcgaattctggtatttaggttcggacttgtgtgatatgtggatttca tttgatgtactatgttgtacagcgtccattttacatttagtggccatatctcttgaccgatactgggcagtgtcgaatat agattacatccgacgaagaagtgctaaacaaattataattatgatcatcattgtttgggtagtctctattgtgatttcga tcgcacccgtcctcggttggaaagacaatggaaacaatcctgacattcttggtatctgtcagatcagccaggacccggct tacaccgtgttttctaccgtcggggcattttactgccctctaattttaatggtggtgctaaattttaagatttacaaagc agcccgatcccgaattagaaagaagcacataagcgcttggacgaaacctccctttcatcgtccctctattacaaacgcag aggggactacgagacacaactcgtccggaagtgaagttagccaagatggttttacagtttacaatggctcttgcatcaat ggtaatgaagaggaaagtcagttcaactacaatgaaaatgacgattctgatgtgaatcacagatttttaactgtaccgtc taacgtttatgttctgaacaaacaactgaatccaccaaaaacttcagaaaacaataatcataaaagaacggataaccgtg ataaagagagaatgcgaaaagcaaaaattgaaatgaaacgggaacgaaaagcagctcgtgttctgggcataatcaccggc gcttttgttgcgtgttggttgccatttttcattcttgctctcgctgggccattttgtaccttctgctattttccacttga attaaaaagtgtgtttctttggctagggtactttaatagtctgcttaaccccatcatttacaccacatttaatccatctt ttagaaatgcctttaacaaactatttttcaaaaagaggaggaggaggcggcaatga |
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Protein
| Protein ID | pfu_aug1.0_7993.1_53073.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_7993.1_53073.t1 MLWDSLTSSNESKVTGARSFLKFDIGNSFKHREYQNESYENMTLLQAGTVLNESAVGSTESIQNISAIIAFEYVPRYSIE IMIVLCVVLSCMIVATIIGNVFVISAIILERSLQGVSNYLILSLAVTDLMVAVLVMPISVIDQVSEFWYLGSDLCDMWIS FDVLCCTASILHLVAISLDRYWAVSNIDYIRRRSAKQIIIMIIIVWVVSIVISIAPVLGWKDNGNNPDILGICQISQDPA YTVFSTVGAFYCPLILMVVLNFKIYKAARSRIRKKHISAWTKPPFHRPSITNAEGTTRHNSSGSEVSQDGFTVYNGSCIN GNEEESQFNYNENDDSDVNHRFLTVPSNVYVLNKQLNPPKTSENNNHKRTDNRDKERMRKAKIEMKRERKAARVLGIITG AFVACWLPFFILALAGPFCTFCYFPLELKSVFLWLGYFNSLLNPIIYTTFNPSFRNAFNKLFFKKRRRRRQ |
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