Gene
| Gene Model ID | pfu_aug1.0_8.1_00052 |
|---|---|
| Locus | scaffold8.1 : 90976 ... 102325 : + |
| To GenomeBrowser | scaffold8.1:90976..102325 |
| Genes list of scaffold | scaffold8.1 |
| Synonym | pfu_aug2.0_981.1_04734 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8.1_00052.t1 | 1 | 1 | zf-HC5HC2H_2 | 1181 | 1261 | 4.7e-10 | 39.4 | 4.3e-13 | 3.2e-09 | 36.7 |
| pfu_aug1.0_8.1_00052.t1 | 1 | 1 | zf-HC5HC2H | 1186 | 1264 | 1.7e-14 | 53.7 | 5.3e-18 | 4.0e-14 | 52.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8.1_00052.t1 | gi|291245069|ref|XP_002742414.1| | PREDICTED: transcription factor 20-like [Saccoglossus kowalevskii] | 5.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_8.1_00052.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00052.t1 atgaaccagtcatcacagcagcaacattctaatcatggctatgctagacgcagcaaccaaaatcagaatccacaagaagt tgccaacaacattttacagatggcagccaccaattatcagccctcacaaactgtgcacatacctctcagtaaaagtaata gacctgctccatatcatgtcccaccaaagtctcctcacagctataatgttcatcctccatcaaagcaatatccgatgtca tctccaccttttgcataccctaattcagcttcccacattccaccacagatgacgagatcatcaccagtcagtcctatgta taacatgcatagtcctgcctctcaacatagttgtcaaagcctgccaaattcaagtccaaggtccatgcacagtccatcac atagcacaagtagcagtggatgtaagaggtcaccatctgcaatggcatctcctgtaggtgaaatgaactctctcatgcat atgcagtcgccaaatagttttggttcatctcatagcataagtgctcctttgaatcaacagctccatgtatctgtttccaa ttctcaccatagttcaattgcctatacaggagatacaatttctccacagcatggaaagctcccacatagatactcaccaa agactaaccccatcagcccaccagttcatcgcagtctttcaaggtcctcatctgtccacagctcacatagtacagcagat catttctcaagtccaccagaaaccaaatacatcagtgatacagtatgtgatagcaataatgatccaccaccaagaagtgg aaaaaatccattgacatctttagaacagctttgtatgcttccggaaaagcaagtagttgaccccaaaagtgtcgtcaatg atgcctgcttagactgtaatagctctaaccagaatcaaaaaaacttggatagcggtgtcgatttgtcacagaaggagaac attccaaagaaagaccaggagtccgagtcgacatcgagaaaagatgctgaaaaccctggtgataaggcatcaaagttgga tgcaccagttgaacaagtagacacttctgaaattaagagtgagctaaacaaaaatgaggatgaaaatatgactgaggagg aaaaaactattgatgagaaaactgatgaaagtgaggtacatgtatctaaagaagaaaatgagcagcattgcaatgacggt aaagttgattgtgtcagtgaagaaaaagaggtcacatcagacatagtacaggagatgtcacagtctgaaaataaacctgg gaaacaagttgaagttccagttaaagctgaagtgaaagacactgaatccccaatggaagcttgtaatagtgatgctgtgc aggaattaactagcactgatctttttattgatcagaattgtaacgtagaacagtgtaaaaatagttcagtgcacatcaat ggattagtatccactagtgatattataactcctgtcatcaagtcaaaggaacaagacaatggcaagtttctagacgacat tcttaatctagaggaagtacctaaagaaaacaacaacgaatttctaaaaggattaaatggtgataagaattcttgtattc agtactataagcctaagtctatcaagaaatctaagcgtgccttaagtaatccaattaaaccaaaatatacctatgataaa agtatccgctcaaaaattctgtccaatgtgaatgaattttcattatcttctgatgaagcaatacctaggaatgaatctat atctgaaaaacttcttctacggcgatctcagatacgaaggaacaggtctgttcatgaagtttcagcgagaatcactagtg ctggtaccattgagagaatgtcttgttcagagtcggacagtgatgatgatggggtccttatggtaagaaaagataaccat tgtacgtatgataggtcatctagggtgctaacagaactgaggagaccagttgctgatggaattacatcacaggaggggga tgtaagctcagacaatgagtcatctaataacattagcagcagcttctgtgaaaaggaaaaagagaatgttaaagaaagtg taggtaatgaagcagtacttgattcagcatccaaaaattcatctgaagtcgcaagtcatggtgagggagagaaaagcagc aaaagaagacgttcagttgaaaaggaatcttcctctataaaaaagacctcaccaggagctttaagaagtttaaagaacaa aactctcaagtctaagaatttgaagaattctggaacctctgaaaaagtgggaacaaagaaacgacgaccagaaagcaaac atttgtctcataaaacttcaaatgatgtgatggatcaagatgaaatagatggtgttaacttcaaaagatctggagctaaa ggagagaaatctagtgccaaaacttctacaagctctagtgctgctccagctagcagtaattcatctaaaaggacaagtag aaggcgaaatagatcatctcctgccaagtacggagatttatattatggaggagactatgtcattgactcagatgatgaaa tagagatggagaaactcacaaaaaggcaaaagaaagctaaggttcaggaagtggaggaagaagaagaggaggaggaggag gaagaagaacctgaaacgatagtgattgatgagagtgatagtgatgatgatgactacgtgccgaacaaggctgaaatcga ggaatttgaatcagtgcatgaaattgtgtcacctcaaaaagaacagacagctactaaacatgaagaggcaaagtcaagta ctgctaaacatgaagtggcaaagtgtagttcttcaaagagtgagaaattaaaaaaagaagctgacaaaaaaattaaacat tctcgtgggaaacataaaagaaaacaaagtgatattagttctagtagacctagaggtggtaaaagtagcaaaggtaaatt atggaagtttgaacatccggtggagaagttcaagtatgatcatgaatccgttcagaatatgaagctgaagaaaacattag atctgatgaaacagaaagacaaaaaagttgtgaaggataattctgccgaagcaaagtcagttggtccgtttataagactg acaaagtctaaggtgaaccctacctcatgtcatgtgatcaatgtaatggatagtgatcaaccgtcagattgtaaaaaagt gatgaagaaaactacatctgtatctgtgtccacagtacacatgtccaaagtaccttctgagaaatcaatattagtgccta acagtgtggtgctagatgagtcaaactgggtctgtgctctctgtggaaagcacagtagctataaatttttgggagattta tttggtccgtattatttagatgggaacttacctagctcaaagaacttggataatttgggtaataacagttgtgatactaa atcaaagagacggaaatcggaggaaagtttaggttgtgctagtgcaaatggacacaaagtgaaaagccgtcgtaagtctg ccacagtgacaaagcctccgatggaagtatgggtccatgaggattgtgtagcttgggcagatggtgtactgctgatagga tctaagatctatggtctggaggaggctgtcagtatagcttcttctacagtgtgttcagtttgtaatgaaacgggtgctac tgttggttgtttacataaaggttgttcacagaaattccatgttacctgtgctgttgaagctgattgcttcatggatgagg agaatttctcattactctgtcagaaacataagagtagaattcttaagaagtcagaaaatatgggtgtgaaatcttga |
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Protein
| Protein ID | pfu_aug1.0_8.1_00052.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8.1_00052.t1 MNQSSQQQHSNHGYARRSNQNQNPQEVANNILQMAATNYQPSQTVHIPLSKSNRPAPYHVPPKSPHSYNVHPPSKQYPMS SPPFAYPNSASHIPPQMTRSSPVSPMYNMHSPASQHSCQSLPNSSPRSMHSPSHSTSSSGCKRSPSAMASPVGEMNSLMH MQSPNSFGSSHSISAPLNQQLHVSVSNSHHSSIAYTGDTISPQHGKLPHRYSPKTNPISPPVHRSLSRSSSVHSSHSTAD HFSSPPETKYISDTVCDSNNDPPPRSGKNPLTSLEQLCMLPEKQVVDPKSVVNDACLDCNSSNQNQKNLDSGVDLSQKEN IPKKDQESESTSRKDAENPGDKASKLDAPVEQVDTSEIKSELNKNEDENMTEEEKTIDEKTDESEVHVSKEENEQHCNDG KVDCVSEEKEVTSDIVQEMSQSENKPGKQVEVPVKAEVKDTESPMEACNSDAVQELTSTDLFIDQNCNVEQCKNSSVHIN GLVSTSDIITPVIKSKEQDNGKFLDDILNLEEVPKENNNEFLKGLNGDKNSCIQYYKPKSIKKSKRALSNPIKPKYTYDK SIRSKILSNVNEFSLSSDEAIPRNESISEKLLLRRSQIRRNRSVHEVSARITSAGTIERMSCSESDSDDDGVLMVRKDNH CTYDRSSRVLTELRRPVADGITSQEGDVSSDNESSNNISSSFCEKEKENVKESVGNEAVLDSASKNSSEVASHGEGEKSS KRRRSVEKESSSIKKTSPGALRSLKNKTLKSKNLKNSGTSEKVGTKKRRPESKHLSHKTSNDVMDQDEIDGVNFKRSGAK GEKSSAKTSTSSSAAPASSNSSKRTSRRRNRSSPAKYGDLYYGGDYVIDSDDEIEMEKLTKRQKKAKVQEVEEEEEEEEE EEEPETIVIDESDSDDDDYVPNKAEIEEFESVHEIVSPQKEQTATKHEEAKSSTAKHEVAKCSSSKSEKLKKEADKKIKH SRGKHKRKQSDISSSRPRGGKSSKGKLWKFEHPVEKFKYDHESVQNMKLKKTLDLMKQKDKKVVKDNSAEAKSVGPFIRL TKSKVNPTSCHVINVMDSDQPSDCKKVMKKTTSVSVSTVHMSKVPSEKSILVPNSVVLDESNWVCALCGKHSSYKFLGDL FGPYYLDGNLPSSKNLDNLGNNSCDTKSKRRKSEESLGCASANGHKVKSRRKSATVTKPPMEVWVHEDCVAWADGVLLIG SKIYGLEEAVSIASSTVCSVCNETGATVGCLHKGCSQKFHVTCAVEADCFMDEENFSLLCQKHKSRILKKSENMGVKS |
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