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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_8.1_00053
Locus scaffold8.1 : 103996 ... 151928 : +
To GenomeBrowser scaffold8.1:103996..151928
Genes list of scaffold scaffold8.1
Synonym pfu_aug2.0_981.1_04735

Manual annotation
Study fieldBiomineralization
Gene namemyhc4
Descriptionreciprocal BLASTP best hit to NCBI Acession NM_001020485
mRNA evidence

Study fieldother
Gene namenonmuscle myosin
DescriptionBLASTP best hit to NCBI Accession AAZ40189
mRNA evidence

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_8.1_00053.t1 1 1 Myosin_N 36 78 2.4e-07 30.3 3.3e-10 7.0e-07 28.8
pfu_aug1.0_8.1_00053.t1 2 1 Myosin_head 90 270 0.0 857.2 0.0 0.0 268.6
pfu_aug1.0_8.1_00053.t1 2 2 Myosin_head 271 738 0.0 857.2 0.0 0.0 596.8
pfu_aug1.0_8.1_00053.t1 3 1 Myosin_tail_1 818 1040 0.0 627.6 5.7e-05 0.12 10.0
pfu_aug1.0_8.1_00053.t1 3 2 Myosin_tail_1 985 1072 0.0 627.6 2.4e-07 0.00051 17.9
pfu_aug1.0_8.1_00053.t1 3 3 Myosin_tail_1 1042 1892 0.0 627.6 0.0 0.0 620.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_8.1_00053.t1 gi|71733128|gb|AAZ40189.1| nonmuscle myosin II, partial [Aplysia californica] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
>Adult tissues
Dshape 1
maleGonad 2
mantle 1

Transcript
Transcript IDpfu_aug1.0_8.1_00053.t1
Definition-
>pfu_aug1.0_8.1_00053.t1
atggcggacgacccctttgaaaacgtgagcgctcaggaactcaggtatttagctgtggacaggaataagatcaatgatcc
tatggtccaggccgaatgggcttcaaaaaagctgatatggattccacatgaagtccacggattttgtgctgctagtataa
aaagtgaccatggagaagaactggaagtggaggtggaagaaagtggaaaacgattccgggtgcacagggatgattgtcaa
aagatgaatcctcctaaattcaataaagtagaggatatggcagagttaacttgcctgaatgaagcatctgttttgcacaa
tttgaaagacagatactattcaggtttgatctatacatactcaggtcttttctgtgttgttgtcaacccatacaaacgtc
tgcccatttacactgacaaagtcattgagctgtacaaaggcaagaagcgccatgaagtgccaccccatgtatttgccatc
actgacacagcctaccgtagcatgctgcaagatcgtgaagatcaatccattctttgcacaggcgagtctggtgcgggtaa
gacagagaatacaaaaaaggtgatacagtacctggcgtacgtcgctgcctcctcacggtctaaccgttcgtccgtctcta
acctccatataccgggagaattagaaaaccagctgttacaagccaatccaatcctcgaggcttttggaaatgcaaaaacc
atcaagaatgacaactcctccagatttggcaaattcatcaggatcaattttgactcatcaggctacatctgtggagctaa
catagagacctaggaatttctgttggatgatatccgtaactacaagttcctgacacatggccatgtccccgtaccaggag
ttgacgatgccaatgatttcaaatcgactgctgaatctatgaccattatgggaatctctgctgaggaacaagcagccatt
ttaagagtggtctcagctgtgttgctctttggaaacatgacgttcaaagcagaaagtagaaactctgatcaggctacgat
gcctgatgatacagtggcccagaaagcttgccatctcctaggacttcaggtgactacagtaactcaggccttcctccgtc
ccaggattaaagttggtcgagattatgttaccaaggcacagacagtggaacaggtggagttctcagttgaagccatatca
aaggcctgttatgagaggatgttccgttggttggtaactagaatcaatcgatctctcgataggaccaagagacaaggtgc
ctccttcatcggtatccttgatattgcaggatttgaaatcttcaagatgaactcctttgagcagctctgtattaactaca
ccaatgagaagcttcagcaactctttaaccataccatgtttatattggaacaagaggagtaccaaagggaaggtatcgaa
tggaaattcatcgacttcggactcgatctacagcctactattgacttgctagagaagcctcttggtctctttgccttggt
ggatgaagaatgcttcttcccaaaagccacggataaatctttcgtcgacaaagttctttcacaacattccgcgcacccta
agttcaggaagccagacttccgtgcagatgcagatttctcacttgtacattatgcaggagaggttgactattcagccaag
aaatggttgatgaaaaacatggacccacttaacgaaaatgtggtagctctcctacagaattcctcagaccaatttgtctc
tctcatatggaaagatgctgagatcgtaggtatgggcgctgctgctgggtcagacactatgtttggctccaggaccagaa
aaggaatgttccgtactgtaggacagttatacaaagaacagctagccaagctcatggcaactctacgcaataccaacccc
aactttgtcagatgtatcatacctaaccacgaaaagaaggctgggaagattgacagtccgttagttttggatcagctccg
atgtaacggtgtcttggagggcatcaggatctgtcgtcagggattccccaacaggatcctcttccaggaattcaggcagc
gatatgaaatactcactcccagcagcattccaaagggcttcatggacggcaagaaggcagtggaaaaaatgatcaatgct
ctagaacttgatcctaacctgtacagagtaggacagagtaagatatttttccgtgctggagtgttagctcacttagaaga
ggaaagagatctcaaactgacagacattatcatccagttccaagctctatgtagaggactgatagccagaagaaattacc
agagacgtttgcagcagttgagtgcaatccgtgttatccagaggaactgtgctgcatatctaaaactgagaaactgggca
tggtggagactgttcacaaaggtgaaacctttattaccagtcacaggacaagaagagaagctgaccgctaaggaggaaga
actgaagaaatacaaagacaactatgaaaaacagaaacaagagtatgaagaagtggaaaggaagtatgcccaaatcattg
aagaaaagtctatactggctgaacagttacaggccgagactgaaatatcagccgaagcagaggagtcacgaaggagaatt
caggccaagaaagaggaattagaggacatcctccatgatatggagttacgtatagaagaggaagaggagaaatgtaacca
gctgatagaggaaaggaagaaatatcaacaaagcatccaagatctggaagatcaattggaggaagaggaacaagctcgac
aaaaacttcagctagaaaaggttacttcggattcccgactcaaaaaattagaagaggaattagctcttcaggatgacact
aatcaaaaactgtcgaaagaaaaacgtagtgtagatgaaagatataacgaaacacaggagaagttagtggaagaagagga
aaaggccaaacaattaggaaaactaaagaataaactagaggcaataatagcagatttagaggaaaggctgcgaaaagaaa
ctcaagcaagacaagagttagagaaaatcagaagacggttagaaggagaaattaatgaccttagggaacagttgactgaa
aaacggctgcaagttgaagaattacagggactacttgctaggagagaagaggaggttcagaattccctacagcaagttga
ggaagaaggagccaataaagctgtagtgataaaacaattgagagaactccaaagccagttgcaagaaacaacagaggatt
tagaaaatgagaaagaatccaggaagaaagctgagaaactccgaatagatcttaacgaagaattggaggctttaaaaaca
gagctggaagagaaccttgatgccacagcggcagtgcaagatgttagagtcaaacgagaggaagaactgaaagaactcaa
aaggacaatacaaagtaatcaaaaacaatatgagacacagatgcaagatacaaaacacaaataccaaacacagattgaac
aactgaatgaagacttggacaatgttcgcaagaacaaacaaacattagagaaaacaaagcagacattggaagcagagaac
acagatcttgctaatgacctcaaatctgtacaaatggcaaaacaagaatctgagcgtaaacgtaagcaggccgagcaaca
acttcaggaagcgaatataagattacaggagagtgatagaggaaagggtgaagccacagataaaaatactagattacaga
atgaagtagagcaaatatcatctcagttagaacaagcagacaccaagaatattcacatgagtcagaaattaagttccctg
gaggctcagctggctgactcccaggaattattacaagaagaaactaaaggtaaactagcggcacaatccaagttacgaca
ggctcaggatgaattgtctaacctgaatgagaacttggaggaagctgaagaggcgaaacataccttggagaaacagaatg
ctgacttacaatcaaaggtatctgacttgaagaggaagttggaggatgataccggtgcggcccaagcagcagaggaggct
aggaagaaggcagccaaggacatggaaacattccaagtacagcttgaggaggctcagtctactattgataggctagagaa
atcaaggaaaaaacttcaggctgaggttgaggaccttaatgtggagttagaaagtcagagggcaagtgtagctgctagtg
ataagaaacagagaaagtttgatcagttacttgctgaagaaaaggcagtctcagagaagttaaacatggagttagacaat
gcatcaagagaatctcgtgaaaaggagacaaagattctaaatctgactagagagttagatgaacttaaagaaatgtatgc
gaaggcagagaggaatcgtcagactcagcaaagggaactggaggacctcatatcatcaagctctgatgttggcaagaatg
ttcatgacttggagaaggccaagaggatcctggagagtcaagtagaggagcagaaaggaaccattgaggagttagaggat
gagttacagagtgccgaggatgccaagctgagacttgaggtcaacatgcaggctctgaaagctcagcttgacagggaact
cgccaataaagatgaccaagtcgaagaacagaagaaatctttactcagacagttaagagagatggagggcgagttggagg
atgagaggaagcagagagccattgcagtgaatggaaggaagaagcttgaaaatgatattaaagacttcgaacaacaagta
gaaatggcaaataaggtcaaagaagatgctgttaaacaactgaagagaatccaggcccagatgaaagagaatttgaaaga
actagaggaagctcgaatgaataaagacgatatggctgcttctgttaaggaaaatgagaagaagataaagggcctagaag
ctgatcttctgaagatgcaagaagatttacaggcagctgagagggcaagacgcaatgctgaagccgaaagggatgagctt
caagatgaaattagtagcaataccactggaaagtcagctttattagacgagaagagacgtttggaggccagaatacagca
actagaagatgaacttgatgatgaacagtcaaatagtgaaacagcaaatgataaattacgcaaaagtcagatggcactcg
aacagatgaacgctgatcttaattctgagcggtcagtaacacagaaactagagggtcaacgcacatctctagagaggcag
aacaaagaaatgaaagagaaattacaggaattagagaacaccatacgaacacgaacaaaggccaccatagcagcactaga
aagtaaagtgtctaacctggaggaacaacttgatattgaaacaaaggaaaggactcaacttcagagaaatgtccgtcgtg
ctgacaagaaacttaaagacatggcaatacaagctgaggatgagaggagacatgctgaccagtataaagaacaggtggat
aaggtgaacaatcgtgttaaggctctcaaacgtcaacttgacgaggcagaagaagaaatcaccagacttaatgcatcaaa
acgcaaacttcagagggacttagacgaacaaatggagcaaaatgaatctgcttcacgagaaatctcacaattaaagaaat
acagacccagtgccactgctagtgctagagcttcacgttccattttatcatcaatccgttccggagtgggtgacgaggat
gatgggagtgccgatgaaacccaggagaattccgaggcttag

Protein
Protein IDpfu_aug1.0_8.1_00053.t1
Definition-
>pfu_aug1.0_8.1_00053.t1
MADDPFENVSAQELRYLAVDRNKINDPMVQAEWASKKLIWIPHEVHGFCAASIKSDHGEELEVEVEESGKRFRVHRDDCQ
KMNPPKFNKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVVNPYKRLPIYTDKVIELYKGKKRHEVPPHVFAI
TDTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAYVAASSRSNRSSVSNLHIPGELENQLLQANPILEAFGNAKT
IKNDNSSRFGKFIRINFDSSGYICGANIETXEFLLDDIRNYKFLTHGHVPVPGVDDANDFKSTAESMTIMGISAEEQAAI
LRVVSAVLLFGNMTFKAESRNSDQATMPDDTVAQKACHLLGLQVTTVTQAFLRPRIKVGRDYVTKAQTVEQVEFSVEAIS
KACYERMFRWLVTRINRSLDRTKRQGASFIGILDIAGFEIFKMNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIE
WKFIDFGLDLQPTIDLLEKPLGLFALVDEECFFPKATDKSFVDKVLSQHSAHPKFRKPDFRADADFSLVHYAGEVDYSAK
KWLMKNMDPLNENVVALLQNSSDQFVSLIWKDAEIVGMGAAAGSDTMFGSRTRKGMFRTVGQLYKEQLAKLMATLRNTNP
NFVRCIIPNHEKKAGKIDSPLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPSSIPKGFMDGKKAVEKMINA
LELDPNLYRVGQSKIFFRAGVLAHLEEERDLKLTDIIIQFQALCRGLIARRNYQRRLQQLSAIRVIQRNCAAYLKLRNWA
WWRLFTKVKPLLPVTGQEEKLTAKEEELKKYKDNYEKQKQEYEEVERKYAQIIEEKSILAEQLQAETEISAEAEESRRRI
QAKKEELEDILHDMELRIEEEEEKCNQLIEERKKYQQSIQDLEDQLEEEEQARQKLQLEKVTSDSRLKKLEEELALQDDT
NQKLSKEKRSVDERYNETQEKLVEEEEKAKQLGKLKNKLEAIIADLEERLRKETQARQELEKIRRRLEGEINDLREQLTE
KRLQVEELQGLLARREEEVQNSLQQVEEEGANKAVVIKQLRELQSQLQETTEDLENEKESRKKAEKLRIDLNEELEALKT
ELEENLDATAAVQDVRVKREEELKELKRTIQSNQKQYETQMQDTKHKYQTQIEQLNEDLDNVRKNKQTLEKTKQTLEAEN
TDLANDLKSVQMAKQESERKRKQAEQQLQEANIRLQESDRGKGEATDKNTRLQNEVEQISSQLEQADTKNIHMSQKLSSL
EAQLADSQELLQEETKGKLAAQSKLRQAQDELSNLNENLEEAEEAKHTLEKQNADLQSKVSDLKRKLEDDTGAAQAAEEA
RKKAAKDMETFQVQLEEAQSTIDRLEKSRKKLQAEVEDLNVELESQRASVAASDKKQRKFDQLLAEEKAVSEKLNMELDN
ASRESREKETKILNLTRELDELKEMYAKAERNRQTQQRELEDLISSSSDVGKNVHDLEKAKRILESQVEEQKGTIEELED
ELQSAEDAKLRLEVNMQALKAQLDRELANKDDQVEEQKKSLLRQLREMEGELEDERKQRAIAVNGRKKLENDIKDFEQQV
EMANKVKEDAVKQLKRIQAQMKENLKELEEARMNKDDMAASVKENEKKIKGLEADLLKMQEDLQAAERARRNAEAERDEL
QDEISSNTTGKSALLDEKRRLEARIQQLEDELDDEQSNSETANDKLRKSQMALEQMNADLNSERSVTQKLEGQRTSLERQ
NKEMKEKLQELENTIRTRTKATIAALESKVSNLEEQLDIETKERTQLQRNVRRADKKLKDMAIQAEDERRHADQYKEQVD
KVNNRVKALKRQLDEAEEEITRLNASKRKLQRDLDEQMEQNESASREISQLKKYRPSATASARASRSILSSIRSGVGDED
DGSADETQENSEA

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